dnapath: Differential Network Analysis using Gene Pathways

Integrates pathway information into the differential network analysis of two gene expression datasets as described in Grimes, Potter, and Datta (2019) <doi:10.1038/s41598-019-41918-3>. Provides summary functions to break down the results at the pathway, gene, or individual connection level. The differential networks for each pathway of interest can be plotted, and the visualization will highlight any differentially expressed genes and all of the gene-gene associations that are significantly differentially connected.

Package details

AuthorTyler Grimes and Somnath Datta
MaintainerTyler Grimes <tyler.grimes@unf.edu>
LicenseGPL-2 | GPL-3
Version0.6.7
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("dnapath")

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dnapath documentation built on March 18, 2021, 5:06 p.m.