meso: Gene expression dataset for two groups

In dnapath: Differential Network Analysis using Gene Pathways

Gene expression dataset for two groups

Description

meso is a list containing gene expression data from Mesothelioma tumors generated by The Cancer Genome Atlas (TCGA) and obtained using the LinkedOmics portal. The first element in the list, named "gene_expression", contains 32 samples (rows) with 150 genes (columns). The second element, named "groups", is a vector of length 32 indicating which group (stage ii or stage iv) each gene expression sample belongs to. See the "Package data" vignette for details.

Usage

meso

Format

A list containing two items:

$gene_expression

A 32 by 150 matrix of gene expression values

$groups

A vector of length 32 indicating which group (stageii or stageiv) each of the rows in the gene expression data belong to.

Source

http://www.linkedomics.org/data_download/TCGA-GBMLGG/

dnapath documentation built on May 9, 2022, 9:05 a.m.