srbct: Khan et al.'s small round blood cells dataset

In dprep: Data Pre-Processing and Visualization Functions for Classification

Description

The sbrct dataset which contains information on 63 samples and 2308 genes. The samples are distributed in four classes as follows: 8 Burkitt Lymphoma (BL), 23 Ewing Sarcoma (EWS), 12 neuroblastoma (NB), and 20 rhabdomyosarcoma (RMS). The last column contains the class labels.

Usage

data(srbct)

Format

A data frame containing 63 observations with 2308 attributes each. The last column of the dat frame contains the class labels for each observation.

Source

The data set was obtained, as binary R file from Marcel Dettling's web site:

• http://stat.ethz.ch/~dettling/bagboost.html

References

Javed Khan, Jun S. Wei, Markus Ringner, Lao H. Saal, Marc Ladanyi, Frank Westermann, Frank Berthold, Manfred Schwab, Cristina R. Antonescu, Carsten Peterson, and Paul S. Meltzer (2001). Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks. Nature Medicine, Volume 7, Number 6, June

Examples

#---z-score Normalization
data(srbct)
srbct.rnorm=rangenorm(srbct,"znorm")
#---feature selection using the RELIEF feature selection algorithm-----
#relief(srbct,63,0.12)

Example output

Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: unable to open X11 display
2: 'rgl_init' failed, running with rgl.useNULL = TRUE 
3: .onUnload failed in unloadNamespace() for 'rgl', details:
  call: fun(...)
  error: object 'rgl_quit' not found 

dprep documentation built on May 29, 2017, 11:01 a.m.