drLumi: Multiplex Immunoassays Data Analysis

Contains quality control routines for multiplex immunoassay data, including several approaches for: treating the background noise of the assay, fitting the dose-response curves and estimating the limits of quantification.

Install the latest version of this package by entering the following in R:
install.packages("drLumi")
AuthorHector Sanz [aut, cre], John Aponte [aut], Jaroslaw Harezlak [aut], Yan Dong [aut], Magdalena Murawska [aut], Clarissa Valim [aut], Aintzane Ayestaran [ctb], Ruth Aguilar [ctb], Gemma Moncunill [ctb]
Date of publication2015-09-24 01:27:27
MaintainerHector Sanz <hector.sanz@isglobal.org>
LicenseGPL (>= 2)
Version0.1.2

View on CRAN

Functions

conf_bands Man page
data_selection Man page
ecdata Man page
est_conc Man page
get_outliers Man page
intra_icc Man page
invest Man page
loq_cv Man page
loq_derivatives Man page
loq_interval Man page
lum_export Man page
lum_import Man page
mfidata Man page
plot.scluminex Man page
scluminex Man page
SSexp Man page
SSexpcons Man page
SSl4 Man page
SSl4cons Man page
SSl5 Man page
SSl5cons Man page
summary.scluminex Man page

Files

inst
inst/tests
inst/tests/report_interval_loq.R inst/tests/test-data_selection.R inst/tests/invest_decreasing.R inst/tests/test-loq_interval.R
inst/NEWS
inst/extdata
inst/extdata/plate1.csv
inst/extdata/bead_data.zip
inst/extdata/bead_data
inst/extdata/bead_data/plate_P1_A2.csv
inst/extdata/bead_data/plate_P1_A1.csv
inst/extdata/toydata.R
inst/doc
inst/doc/drLumi.R
inst/doc/drLumi.rnw
inst/doc/drLumi.pdf
tests
tests/test-all.R
NAMESPACE
data
data/ecdata.rda
data/mfidata.rda
R
R/lum_import_fluor.R R/get_aic.R R/avgimport.R R/getPredict.R R/invest.R R/get_modelfit.R R/get_fitted.R R/plot.scluminex.R R/scluminex.R R/print.summary.scluminex.R R/define_data.R R/as.data.frame.summary.scluminex.R R/data_selection.R R/print.lum_export.R R/invest.loq.interval.R R/get_convergence.R R/intra_icc.R R/lum_import.default.R R/summary.scluminex.R R/mfidata.R R/geom_mean.R R/luminexData-internal.R R/lum_import.R R/est_conc.R R/plotLum.R R/derivative.R R/get_neilltest.R R/sampleimport.R R/extractcoef.R R/regionimport.R R/print.scluminex.R R/fix_name.R R/invest.fun.R R/conf_bands.R R/get_outliers.R R/summary.loq.R R/loq_interval.R R/print.loq.R R/scurveimport.R R/loq_derivatives.R R/lum_import_bead.R R/SSFunctions.R R/batchimport.R R/convert_time.R R/bead_fun.R R/get_rsq.R R/compair.R R/wellsimport.R R/plotRes.R R/ecdata.R R/print.lum_import.R R/plotQQnorm.R R/as.data.frame.scluminex.R R/loq_cv.R R/lum_export.R
vignettes
vignettes/unnamed-chunk-35.pdf
vignettes/flow.pdf
vignettes/drLumi_vignette.bib
vignettes/unnamed-chunk-19.pdf
vignettes/unnamed-chunk-26-1.pdf
vignettes/unnamed-chunk-34.pdf
vignettes/qqplot.pdf
vignettes/unnamed-chunk-36.pdf
vignettes/loqder.pdf
vignettes/unnamed-chunk-5.tex
vignettes/unnamed-chunk-57-1.pdf
vignettes/drLumi.rnw
vignettes/resplot.pdf
vignettes/unnamed-chunk-54-1.pdf
vignettes/unnamed-chunk-38.pdf
vignettes/unnamed-chunk-14.pdf
vignettes/unnamed-chunk-37.pdf
vignettes/unnamed-chunk-52-1.pdf
vignettes/unnamed-chunk-13.pdf
vignettes/comparisonbackground.pdf
vignettes/flow.tex
vignettes/scurveplot.pdf
vignettes/unnamed-chunk-12.pdf
vignettes/backcomparison.pdf
vignettes/flow.synctex.gz
vignettes/test.vrb
vignettes/unnamed-chunk-18.pdf
vignettes/unnamed-chunk-33.pdf
vignettes/framed.sty
MD5
build
build/vignette.rds
DESCRIPTION
man
man/est_conc.Rd man/mfidata.Rd man/plot.scluminex.Rd man/invest.Rd man/SSl5cons.Rd man/ecdata.Rd man/data_selection.Rd man/lum_export.Rd man/SSl4.Rd man/loq_derivatives.Rd man/get_outliers.Rd man/conf_bands.Rd man/SSexp.Rd man/loq_interval.Rd man/lum_import.Rd man/SSl4cons.Rd man/scluminex.Rd man/SSexpcons.Rd man/SSl5.Rd man/summary.scluminex.Rd man/loq_cv.Rd man/intra_icc.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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