drLumi: Multiplex Immunoassays Data Analysis

Contains quality control routines for multiplex immunoassay data, including several approaches for: treating the background noise of the assay, fitting the dose-response curves and estimating the limits of quantification.

AuthorHector Sanz [aut, cre], John Aponte [aut], Jaroslaw Harezlak [aut], Yan Dong [aut], Magdalena Murawska [aut], Clarissa Valim [aut], Aintzane Ayestaran [ctb], Ruth Aguilar [ctb], Gemma Moncunill [ctb]
Date of publication2015-09-24 01:27:27
MaintainerHector Sanz <hector.sanz@isglobal.org>
LicenseGPL (>= 2)
Version0.1.2

View on CRAN

Functions

conf_bands Man page
data_selection Man page
ecdata Man page
est_conc Man page
get_outliers Man page
intra_icc Man page
invest Man page
loq_cv Man page
loq_derivatives Man page
loq_interval Man page
lum_export Man page
lum_import Man page
mfidata Man page
plot.scluminex Man page
scluminex Man page
SSexp Man page
SSexpcons Man page
SSl4 Man page
SSl4cons Man page
SSl5 Man page
SSl5cons Man page
summary.scluminex Man page

Files

drLumi
drLumi/inst
drLumi/inst/tests
drLumi/inst/tests/report_interval_loq.R
drLumi/inst/tests/test-data_selection.R
drLumi/inst/tests/invest_decreasing.R
drLumi/inst/tests/test-loq_interval.R
drLumi/inst/NEWS
drLumi/inst/extdata
drLumi/inst/extdata/plate1.csv
drLumi/inst/extdata/bead_data.zip
drLumi/inst/extdata/bead_data
drLumi/inst/extdata/bead_data/plate_P1_A2.csv
drLumi/inst/extdata/bead_data/plate_P1_A1.csv
drLumi/inst/extdata/toydata.R
drLumi/inst/doc
drLumi/inst/doc/drLumi.R
drLumi/inst/doc/drLumi.rnw
drLumi/inst/doc/drLumi.pdf
drLumi/tests
drLumi/tests/test-all.R
drLumi/NAMESPACE
drLumi/data
drLumi/data/ecdata.rda
drLumi/data/mfidata.rda
drLumi/R
drLumi/R/lum_import_fluor.R drLumi/R/get_aic.R drLumi/R/avgimport.R drLumi/R/getPredict.R drLumi/R/invest.R drLumi/R/get_modelfit.R drLumi/R/get_fitted.R drLumi/R/plot.scluminex.R drLumi/R/scluminex.R drLumi/R/print.summary.scluminex.R drLumi/R/define_data.R drLumi/R/as.data.frame.summary.scluminex.R drLumi/R/data_selection.R drLumi/R/print.lum_export.R drLumi/R/invest.loq.interval.R drLumi/R/get_convergence.R drLumi/R/intra_icc.R drLumi/R/lum_import.default.R drLumi/R/summary.scluminex.R drLumi/R/mfidata.R drLumi/R/geom_mean.R drLumi/R/luminexData-internal.R drLumi/R/lum_import.R drLumi/R/est_conc.R drLumi/R/plotLum.R drLumi/R/derivative.R drLumi/R/get_neilltest.R drLumi/R/sampleimport.R drLumi/R/extractcoef.R drLumi/R/regionimport.R drLumi/R/print.scluminex.R drLumi/R/fix_name.R drLumi/R/invest.fun.R drLumi/R/conf_bands.R drLumi/R/get_outliers.R drLumi/R/summary.loq.R drLumi/R/loq_interval.R drLumi/R/print.loq.R drLumi/R/scurveimport.R drLumi/R/loq_derivatives.R drLumi/R/lum_import_bead.R drLumi/R/SSFunctions.R drLumi/R/batchimport.R drLumi/R/convert_time.R drLumi/R/bead_fun.R drLumi/R/get_rsq.R drLumi/R/compair.R drLumi/R/wellsimport.R drLumi/R/plotRes.R drLumi/R/ecdata.R drLumi/R/print.lum_import.R drLumi/R/plotQQnorm.R drLumi/R/as.data.frame.scluminex.R drLumi/R/loq_cv.R drLumi/R/lum_export.R
drLumi/vignettes
drLumi/vignettes/unnamed-chunk-35.pdf
drLumi/vignettes/flow.pdf
drLumi/vignettes/drLumi_vignette.bib
drLumi/vignettes/unnamed-chunk-19.pdf
drLumi/vignettes/unnamed-chunk-26-1.pdf
drLumi/vignettes/unnamed-chunk-34.pdf
drLumi/vignettes/qqplot.pdf
drLumi/vignettes/unnamed-chunk-36.pdf
drLumi/vignettes/loqder.pdf
drLumi/vignettes/unnamed-chunk-5.tex
drLumi/vignettes/unnamed-chunk-57-1.pdf
drLumi/vignettes/drLumi.rnw
drLumi/vignettes/resplot.pdf
drLumi/vignettes/unnamed-chunk-54-1.pdf
drLumi/vignettes/unnamed-chunk-38.pdf
drLumi/vignettes/unnamed-chunk-14.pdf
drLumi/vignettes/unnamed-chunk-37.pdf
drLumi/vignettes/unnamed-chunk-52-1.pdf
drLumi/vignettes/unnamed-chunk-13.pdf
drLumi/vignettes/comparisonbackground.pdf
drLumi/vignettes/flow.tex
drLumi/vignettes/scurveplot.pdf
drLumi/vignettes/unnamed-chunk-12.pdf
drLumi/vignettes/backcomparison.pdf
drLumi/vignettes/flow.synctex.gz
drLumi/vignettes/test.vrb
drLumi/vignettes/unnamed-chunk-18.pdf
drLumi/vignettes/unnamed-chunk-33.pdf
drLumi/vignettes/framed.sty
drLumi/MD5
drLumi/build
drLumi/build/vignette.rds
drLumi/DESCRIPTION
drLumi/man
drLumi/man/est_conc.Rd drLumi/man/mfidata.Rd drLumi/man/plot.scluminex.Rd drLumi/man/invest.Rd drLumi/man/SSl5cons.Rd drLumi/man/ecdata.Rd drLumi/man/data_selection.Rd drLumi/man/lum_export.Rd drLumi/man/SSl4.Rd drLumi/man/loq_derivatives.Rd drLumi/man/get_outliers.Rd drLumi/man/conf_bands.Rd drLumi/man/SSexp.Rd drLumi/man/loq_interval.Rd drLumi/man/lum_import.Rd drLumi/man/SSl4cons.Rd drLumi/man/scluminex.Rd drLumi/man/SSexpcons.Rd drLumi/man/SSl5.Rd drLumi/man/summary.scluminex.Rd drLumi/man/loq_cv.Rd drLumi/man/intra_icc.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.