Description Usage Arguments Details Value Examples
This function extracts outliers based on a residuals cutoff from
scluminex
object.
1 | get_outliers(x, out.limit = 2.5)
|
x |
a |
out.limit |
cutoff point for outliers |
The residuals are the standardized ones
for nls
models.
A data.frame
with samples whose standardized
residual is greater than out.limit
.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 | # Load data and estimate models
data(ecdata)
data(mfidata)
dat <- mfidata[mfidata$plate=="plate_1" & mfidata$analyte=="FGF",]
# Select data and fit models
sdf <- data_selection(dat, ecdata)[[1]]
igmodels <- scluminex("plate_1",sdf$standard, sdf$background,
lfct=c("SSl4", "SSl5"),
bkg="ignore",
fmfi="mfi",
verbose=FALSE)
# Extract outliers > abs(2.5)
get_outliers(igmodels, out.limit=2.5)
# Extract outliers > abs(1.5)
get_outliers(igmodels, out.limit=1.5)
# Extract outliers > abs(1)
get_outliers(igmodels, out.limit=1)
|
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