distributions: Distributions for a range of positions between <start> and...

In drimmR: Estimation, Simulation and Reliability of Drifting Markov Models

Distributions for a range of positions between <start> and <end>

Description

Distributions for a range of positions between <start> and <end>

Usage

distributions(
  x,
  start = 1,
  end = NULL,
  step = NULL,
  output_file = NULL,
  plot = FALSE,
  ncpu = 2
)

Arguments

x	An object of class dmm
start	Start position : a positive integer giving the start position along the sequence from which the distributions of the DMM should be computed
end	End position : a positive integer giving the end position along the sequence until which the distributions of the DMM should be computed
step	A step (integer)
output_file	(Optional) A file containing matrix of distributions (e.g, "C:/.../DIST.txt")
plot	FALSE (default); TRUE (display a figure plot of distribution probabilities by position)
ncpu	Default=2. Represents the number of cores used to parallelized computation. If ncpu=-1, then it uses all available cores.

Value

A matrix with positions and distributions of states

Author(s)

Alexandre Seiller

References

\insertRef

BaVe2018drimmR \insertRefVer08drimmR

See Also

fitdmm, getDistribution, getStationaryLaw

Examples

data(lambda, package = "drimmR")
dmm <- fitdmm(lambda, 1, 1, c('a','c','g','t'), init.estim = "freq", fit.method="sum")
distributions(dmm,start=1,end=1000,step=100, plot=TRUE)

drimmR documentation built on Oct. 9, 2026, 5:08 p.m.