words_probabilities: Probability of appearance of several words at several...
In drimmR: Estimation, Simulation and Reliability of Drifting Markov Models

words_probabilities

R Documentation

Probability of appearance of several words at several positions of a DMM

Description

Probability of appearance of several words at several positions of a DMM

Usage

words_probabilities(words, pos, x, output_file = NULL, plot = FALSE)

Arguments

`words`	A vector of characters containing words
`pos`	A vector of integer positions
`x`	An object of class `dmm`
`output_file`	(Optional) A file containing the matrix of probabilities (e.g,"C:/.../PROB.txt")
`plot`	`FALSE` (default); `TRUE` (display figure plots of words' probabilities by position)

Value

A dataframe of word probabilities along the positions of the sequence

Author(s)

Victor Mataigne, Alexandre Seiller

References

\insertRef

BaVe2018drimmR \insertRefVer08drimmR

Examples

data(lambda, package = "drimmR")
dmm <- fitdmm(lambda, 1, 1, c('a','c','g','t'), init.estim = "freq",
fit.method="sum")
words <- c("atcgattc", "taggct", "ggatcgg")
pos <- c(100,300)
words_probabilities(words=words,pos=pos,dmm,plot=TRUE)

drimmR documentation built on Oct. 9, 2026, 5:08 p.m.