word_probabilities: Probabilities of a word at several positions of a DMM

In drimmR: Estimation, Simulation and Reliability of Drifting Markov Models

Probabilities of a word at several positions of a DMM

Description

Probabilities of a word at several positions of a DMM

Usage

word_probabilities(word, pos, x, output_file = NULL, plot = FALSE)

Arguments

word	A subsequence (string of characters)
pos	A vector of integer positions
x	An object of class dmm
output_file	(Optional) A file containing the vector of probabilities (e.g,"C:/.../PROB.txt")
plot	FALSE (default); TRUE (display figure plot of word's probabilities by position)

Value

A numeric vector, probabilities of word

Author(s)

Victor Mataigne, Alexandre Seiller

References

\insertRef

BaVe2018drimmR \insertRefVer08drimmR

See Also

fitdmm, getTransitionMatrix, word_probability, words_probabilities

Examples

data(lambda, package = "drimmR")
dmm <- fitdmm(lambda, 1, 1, c('a','c','g','t'),
init.estim = "freq", fit.method="sum")
word_probabilities("aggctga",c(100,300),dmm, plot=TRUE)

drimmR documentation built on Oct. 9, 2026, 5:08 p.m.