word_probability: Probability of a word at a position t of a DMM

In drimmR: Estimation, Simulation and Reliability of Drifting Markov Models

Probability of a word at a position t of a DMM

Description

Probability of a word at a position t of a DMM

Usage

word_probability(word, pos, x, output_file = NULL, internal = FALSE, ncpu = 2)

Arguments

word	A subsequence (string of characters)
pos	A position (numeric)
x	An object of class dmm
output_file	(Optional) A file containing the probability (e.g,"C:/.../PROB.txt")
internal	FALSE (default) ; TRUE (for internal use of word applications)
ncpu	Default=2. Represents the number of cores used to parallelized computation. If ncpu=-1, then it uses all available cores.

Value

A numeric, probability of word

Author(s)

Victor Mataigne, Alexandre Seiller

References

\insertRef

BaVe2018drimmR \insertRefVer08drimmR

See Also

fitdmm, getTransitionMatrix, word_probabilities, words_probabilities

Examples

data(lambda, package = "drimmR")
dmm <- fitdmm(lambda, 1, 1, c('a','c','g','t'), init.estim = "freq", fit.method="sum")
word_probability("aggctga",4,dmm)

drimmR documentation built on Oct. 9, 2026, 5:08 p.m.