Files in dynamichazard
Dynamic Hazard Models using State Space Models

MD5
NEWS.md
DESCRIPTION
NAMESPACE
inst/shiny/app.R inst/doc/Diagnostics.Rmd inst/doc/Diagnostics.pdf
inst/doc/ddhazard.Rnw
inst/doc/Bootstrap_illustration.pdf inst/doc/ddhazard.R
inst/doc/Particle_filtering.pdf.asis
inst/doc/Particle_filtering.pdf inst/doc/ddhazard.pdf inst/doc/Comparing_methods_for_logistic_models.Rmd inst/doc/Diagnostics.R
inst/doc/Bootstrap_illustration.pdf.asis
inst/doc/Comparing_methods_for_logistic_models.pdf inst/doc/Comparing_methods_for_logistic_models.R vignettes/Diagnostics.Rmd
vignettes/bibliography.bib
vignettes/ddhazard.Rnw
vignettes/bib_style.csl
vignettes/ddbib.bib
vignettes/Particle_filtering.pdf.asis
vignettes/Comparing_methods_for_logistic_models.Rmd
vignettes/Bootstrap_illustration.pdf.asis
vignettes/Diagnostics/whas500.RData
vignettes/Diagnostics/Rossi.RData
R/get_design_matrix.R R/PF.R R/risk_obj.R R/shiny_app.R R/roxygen_tags.R R/HDs.R R/ddhazard.R R/residuals.R R/plot.R R/utils.R R/hatvalues.R R/loglike.R R/static_glm.R R/RcppExports.R R/options.R R/sims.R R/boot_est.R R/print.R R/predict.R R/summary.R
src/PF.cpp
src/bigglm_wrapper.h
src/loglike.cpp
src/parallel_qr.h
src/family.cpp
src/thread_pool.cpp
src/ddhazard_fit.cpp
src/family.h
src/Makevars.win
src/ddhazard.h
src/arma_BLAS_LAPACK.h
src/estimate_fixed_effects_M_step.cpp
src/utils.cpp
src/bigglm_wrapper.cpp
src/RcppExports.cpp
src/for_tests.cpp
src/utils.h
src/lin_maps.h
src/risk_obj.cpp
src/problem_data.h
src/Makevars
src/PF_fixed_effects.cpp
src/R_BLAS_LAPACK.h
src/parallel_glm.cpp
src/arma_n_rcpp.h
src/sample_funcs.h
src/parallel_qr.cpp
src/lin_maps.cpp
src/estimate_fixed_effects_M_step.h
src/thread_pool.h
src/sample_funcs.cpp
src/PF/resamplers.h
src/PF/est_params_dens.cpp
src/PF/PF_logger.cpp
src/PF/PFs.h
src/PF/est_params.h
src/PF/PF_utils.h
src/PF/PF_utils.cpp
src/PF/densities.h
src/PF/importance_samplers.cpp
src/PF/particles.cpp
src/PF/dmvnrm.cpp
src/PF/particles.h
src/PF/get_work_blocks.h
src/PF/est_params_RW.cpp
src/PF/smoother_output.cpp
src/PF/importance_samplers.h
src/PF/dmvnrm.h
src/PF/PF_data.h
src/PF/taylor_normal_approx.cpp
src/PF/r_to_cpp_clouds_n_reverse.cpp
src/biglm/boundedQRf.f
src/BLAS_LAPACK/arma_BLAS_LAPACK.cpp
src/BLAS_LAPACK/R_BLAS_LAPACK.cpp
src/BLAS_LAPACK/dchur.f
src/ddhazard/UKF_solver.cpp
src/ddhazard/SMA_solver.cpp
src/ddhazard/EKF_solver.cpp
src/ddhazard/GMA_solver.cpp
man/summary.ddhazard.Rd man/get_cloud_quantiles.Rd man/ddhazard_boot.Rd man/ddFixed.Rd man/ddhazard_control.Rd man/PF_control.Rd man/get_survival_case_weights_and_data.Rd man/logLik.PF_EM.Rd man/PF_forward_filter.Rd man/plot.ddhazard.Rd man/predict.ddhazard.Rd man/PF_EM.Rd man/hatvalues.ddhazard.Rd man/ddhazard.Rd man/get_risk_obj.Rd man/plot.PF_clouds.Rd man/print.ddhazard_boot.Rd man/plot.PF_EM.Rd man/logLik.ddhazard.Rd man/plot.ddhazard_space_errors.Rd man/residuals.ddhazard.Rd man/static_glm.Rd man/hds.Rd man/ddsurvcurve.Rd man/ddhazard_app.Rd man/get_cloud_means.Rd man/get_Q_0.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test_UKF.R tests/testthat/test_weights.R
tests/testthat/whas500.RData
tests/testthat/helper.R tests/testthat/test_loglike.R tests/testthat/test_static_glm.R tests/testthat/test_design_mat_and_risk_obj.R tests/testthat/test_bigglm_wrapper.R tests/testthat/test_cpp_sample_funcs.R
tests/testthat/VAR_data.RDS
tests/testthat/test_GMA.R tests/testthat/test_test_utils.R
tests/testthat/binary.csv
tests/testthat/test_summary.R tests/testthat/test_ddhazard_n_EKF.R tests/testthat/test_predict.R tests/testthat/test_parallelglm.R tests/testthat/test_print.R tests/testthat/test_shiny_app.R
tests/testthat/Rossi.RData
tests/testthat/test_help_page_examples.R tests/testthat/test_LAPACK_BLAS.R tests/testthat/test_options.R tests/testthat/test_cloglog.R tests/testthat/test_plot.R tests/testthat/test_hatvalues.R tests/testthat/test_residuals.R tests/testthat/test_get_start_values.R
tests/testthat/VAR_restrict_vs_non_data.RDS
tests/testthat/test_fixed_effects_in_M_step.R tests/testthat/test_fixed_effects_in_E_step.R tests/testthat/test_boot_est.R tests/testthat/test_cpp_utils.R
tests/testthat/ddsurvcurve-fix-cont.RDS
tests/testthat/test_PF.R tests/testthat/test_SMA.R
tests/testthat/previous_results/cloglog-PF-RW.RDS
tests/testthat/previous_results/posterior_approx_logit_fixed_M.RDS
tests/testthat/previous_results/E_step_sim_EKF_order_two.RDS
tests/testthat/previous_results/boot2.RDS
tests/testthat/previous_results/survival_lung_example_cloud_means.RDS
tests/testthat/previous_results/Rossi_state.RDS
tests/testthat/previous_results/boot4.RDS
tests/testthat/previous_results/Rossi_pearson.RDS
tests/testthat/previous_results/summary_ddhazard_fixed_print
tests/testthat/previous_results/hats_dym_Rossi.RDS
tests/testthat/previous_results/PF_head_neck_cloud_means.RDS
tests/testthat/previous_results/summary_ddhazard_all_coef_object.RDS
tests/testthat/previous_results/PF_clouds_print
tests/testthat/previous_results/static1.RDS
tests/testthat/previous_results/hats_dym_n_fixed_whas500.RDS
tests/testthat/previous_results/ddsurvcurve-fix-disc-1.RDS
tests/testthat/previous_results/ddhazard_help_page_order_one.RDS
tests/testthat/previous_results/fixed_terms_UKF_exp_E_step.RDS
tests/testthat/previous_results/fixed_terms_UKF.RDS
tests/testthat/previous_results/posterior_approx_logit_fixed_E.RDS
tests/testthat/previous_results/ddhazard_exp_sim_data.RDS
tests/testthat/previous_results/whas_state.RDS
tests/testthat/previous_results/ddhazard_help_page_predict_response.RDS
tests/testthat/previous_results/posterior_approx_logit_pbc.RDS
tests/testthat/previous_results/posterior_approx_logit_pbc_large_by.RDS
tests/testthat/previous_results/UKF2.RDS
tests/testthat/previous_results/boot_posterior_approx.RDS
tests/testthat/previous_results/summary_ddhazard_one_digit_print
tests/testthat/previous_results/posterior_approx_logit_2_order.RDS
tests/testthat/previous_results/E_step_fixed_pbc.RDS
tests/testthat/previous_results/GMA_pbc_o2_logit.RDS
tests/testthat/previous_results/summary_ddhazard_object.RDS
tests/testthat/previous_results/hats_dym_whas500.RDS
tests/testthat/previous_results/PF_quantile_2D.RDS
tests/testthat/previous_results/get_survival_case_weights_and_data_help_page_2.RDS
tests/testthat/previous_results/E_step_sim_exp_UKF.RDS
tests/testthat/previous_results/ddsurvcurve-fix-disc-2.RDS
tests/testthat/previous_results/get_survival_case_weights_and_data_help_page_1.RDS
tests/testthat/previous_results/fixed_terms1.RDS
tests/testthat/previous_results/GMA_pbc_o1_exp.RDS
tests/testthat/previous_results/summary_ddhazard_one_coef_print
tests/testthat/previous_results/ddhazard_boot_help_page.RDS
tests/testthat/previous_results/summary_ddhazard_one_digit_object.RDS
tests/testthat/previous_results/summary_ddhazard_exp_print
tests/testthat/previous_results/E_step_sim_UKF.RDS
tests/testthat/previous_results/static_glm_help_page.RDS
tests/testthat/previous_results/summary_ddhazard_one_coef_object.RDS
tests/testthat/previous_results/head_neck_exp.RDS
tests/testthat/previous_results/PF_normal_approx_w_particles_cloud_means.RDS
tests/testthat/previous_results/summary_ddhazard_UKF_print
tests/testthat/previous_results/ddhazard_help_page_order_two.RDS
tests/testthat/previous_results/PF_VARS.RDS
tests/testthat/previous_results/boot3.RDS
tests/testthat/previous_results/E_step_sim_exp_UKF_order_two.RDS
tests/testthat/previous_results/pf_t_dist_proposal.RDS
tests/testthat/previous_results/print_ddhazard_UKF
tests/testthat/previous_results/get_risk_obj_help_page.RDS
tests/testthat/previous_results/cloglog-sim-ekf-1-it.RDS
tests/testthat/previous_results/ddhazard_help_page_loglike.RDS
tests/testthat/previous_results/ddhazard_head_neck.RDS
tests/testthat/previous_results/hats_dym_n_fixed_Rossi.RDS
tests/testthat/previous_results/PF_EM_print
tests/testthat/previous_results/util_sim_logit.RDS
tests/testthat/previous_results/n_smooth_final_VAR.RDS
tests/testthat/previous_results/GMA_pbc_fixed_M_step.RDS
tests/testthat/previous_results/PF_VARS_non_zero_mean_slope.RDS
tests/testthat/previous_results/sim_exp.RDS
tests/testthat/previous_results/fixed_terms_UKF_exp.RDS
tests/testthat/previous_results/summary_ddhazard_UKF_object.RDS
tests/testthat/previous_results/std_space_error_print
tests/testthat/previous_results/PF_VARS_non_zero_mean_inter.RDS
tests/testthat/previous_results/boot_print
tests/testthat/previous_results/E_step_fixed_head_neck.RDS
tests/testthat/previous_results/Brier_AUX_normal_w_particles_cloud_means.RDS
tests/testthat/previous_results/summary_ddhazard_print
tests/testthat/previous_results/n_smooth_final_RW.RDS
tests/testthat/previous_results/GMA_head_neck_cancer_o1.RDS
tests/testthat/previous_results/UKF4.RDS
tests/testthat/previous_results/summary_ddhazard_all_coef_print
tests/testthat/previous_results/UKF_exp_head_neck.RDS
tests/testthat/previous_results/ddhazard_exp_clip_w_jump.RDS
tests/testthat/previous_results/boot_print_w_o_fixed
tests/testthat/previous_results/fixed_terms_pbc.RDS
tests/testthat/previous_results/ddhazard_help_page_residuals.RDS
tests/testthat/previous_results/AUX_normal_approx_w_particles_cloud_means.RDS
tests/testthat/previous_results/GMA_pbc_o2_logit_lower_LR.RDS
tests/testthat/previous_results/GMA_pbc_fixed_E_step.RDS
tests/testthat/previous_results/UKF1.RDS
tests/testthat/previous_results/PF_head_neck_w_Brier_method_cloud_means.RDS
tests/testthat/previous_results/cloglog-preds.RDS
tests/testthat/previous_results/pearson.RDS
tests/testthat/previous_results/hatvalues_help_page.RDS
tests/testthat/previous_results/print-ddsurvcurve
tests/testthat/previous_results/cloglog-sim-gma.RDS
tests/testthat/previous_results/posterior_approx_exp_pbc.RDS
tests/testthat/previous_results/util_sim_exp.RDS
tests/testthat/previous_results/whas_pearson.RDS
tests/testthat/previous_results/E_step_fixed_exp_head_neck.RDS
tests/testthat/previous_results/print_ddhazard_exp
tests/testthat/previous_results/space_error_print
tests/testthat/previous_results/PF_normal_approx_w_cloud_mean_cloud_means.RDS
tests/testthat/previous_results/ddhazard_help_page_predict_term.RDS
tests/testthat/previous_results/ddhazard_exp_clip.RDS
tests/testthat/previous_results/summary_ddhazard_fixed_object.RDS
tests/testthat/previous_results/cloglog-sim-ekf-more-it.RDS
tests/testthat/previous_results/print_ddhazard
tests/testthat/previous_results/AUX_normal_approx_w_cloud_mean_cloud_means.RDS
tests/testthat/previous_results/ddsurvcurve-fix-cont.RDS
tests/testthat/previous_results/bootstrap_filter_cloud_means.RDS
tests/testthat/previous_results/boot1.RDS
tests/testthat/previous_results/summary_ddhazard_exp_object.RDS
tests/testthat/previous_results/PF_mean_2D.RDS
data/hds.rda
data/datalist
dynamichazard documentation built on Jan. 11, 2019, 5:07 p.m.