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easybio: Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit
Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker2.0' database (see Xia Li, Peng Wang, Yunpeng Zhang (2023) <doi: 10.1093/nar/gkac947>). Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<https://portal.gdc.cancer.gov/> and GEO<https://www.ncbi.nlm.nih.gov/geo/> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows. See Wei Cui (2024) <doi: 10.1101/2024.09.14.609619> for more details.
Getting started
Browse package contents
Package details |
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| Author | Wei Cui [aut, cre, cph] (<https://orcid.org/0009-0004-8315-5899>) |
| Bioconductor views | GEOquery edgeR fgsea limma |
| Maintainer | Wei Cui <m2c.w@outlook.com> |
| License | MIT + file LICENSE |
| Version | 1.1.0 |
| URL | https://github.com/person-c/easybio |
| Package repository | View on CRAN |
| Installation |
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