effectR: Predicts Oomycete Effectors

Predicts cytoplasmic effector proteins using genomic data by searching for motifs of interest using regular expression searches and hidden Markov models (HMM) based in Haas et al. (2009) <doi:10.1038/nature08358>.

Package details

AuthorJavier Tabima [aut, cre], Niklaus J. Grunwald [ths]
MaintainerJavier Tabima <tabimaj@oregonstate.edu>
LicenseGPL-2 | GPL-3
Package repositoryView on CRAN
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effectR documentation built on May 1, 2019, 7:28 p.m.