get_hmmer_path: Check if HMMER is installed and return path

In effectR: Predicts Oomycete Effectors

Description

Check if HMMER is installed and return path to an executable

Usage

get_hmmer_path(command, hmmer.path = NULL, error = TRUE,
  verbose = FALSE)

Arguments

command	Which command to get the path for. For example "hmmsearch".
error	If TRUE, throw an error if HMMER is not installed.
verbose	If TRUE, print progress reports.
path	Where to look for HMMER. By default it will look on the search path.

Value

TRUE/FALSE

effectR documentation built on May 1, 2019, 7:28 p.m.