shiny.effectR: Function to run the effectR package using a shiny app

In effectR: Predicts Oomycete Effectors

Description

This function will launch an interactive web interface to run the effectR package functions to obtain effectors. It runs using the shiny R package.

Usage

shiny.effectR(mafft.path = NULL, hmm.path = NULL)

Arguments

mafft.path	Local path of folder containing the MAFFT binary executable file or the executable file itself. If not specified, then MAFFT must be in the program search path.
hmm.path	Local path of folder containing the HMMER binaries. If not specified, then HMMER executables must be in the program search path.

Details

To successfully run this function the user will need to set the

effectR documentation built on May 1, 2019, 7:28 p.m.