candidate.rxlr | An example of 'effector.summary' output |
effector.summary | Returns non-redundant sequences from hmm.search or... |
effectR | effectR: An R Package to Call Oomycete Effectors |
fasta_to_stockholm | Converts FASTA to STOCKHOLM |
get_hmmer_path | Check if HMMER is installed and return path |
get_mafft_path | Check if MAFFT is installed and return path |
hmm.logo | Plots the relative frequencies of each position for... |
hmm.search | Searching for motifs using HMM searches |
regex.search | Searching for motifs using regular expressions (REGEX) |
shiny.effectR | Function to run the effectR package using a shiny app |
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