get_synergy_comparison_sets: Get synergy comparison sets

In emba: Ensemble Boolean Model Biomarker Analysis

Description

This helper function identifies pairs of (set, subset) for each synergy (implicitly given through the synergy.subset.stats object) where each respective subset misses just one synergy from the larger set.

Usage

get_synergy_comparison_sets(synergy.subset.stats)

Arguments

synergy.subset.stats

integer vector with values the amount of models that predicted each synergy subset, defined as a comma-separated string of drug combinations in the names attribute of the vector. It can be the result of using the function get_synergy_subset_stats.

Value

data.frame object with 3 columns. For each row, the 1st column defines a single synergy of interest (e.g. drug combination "A-B"), the 2nd a synergy set that includes the single one (e.g. the set "F-G,A-B,C-D") and the 3rd the synergy subset of the set that does not include the single synergy of the first column (e.g. "F-G,C-D").

emba documentation built on Jan. 7, 2021, 9:09 a.m.