API for emba
Ensemble Boolean Model Biomarker Analysis

Global functions
add_numbers_above_the_bars Man page Source code
assign_link_operator_value_to_equation Man page Source code
biomarker_mcc_analysis Man page Source code
biomarker_synergy_analysis Man page Source code
biomarker_tp_analysis Man page Source code
calculate_mcc Man page Source code
calculate_models_mcc Man page Source code
calculate_models_synergies_fn Man page Source code
calculate_models_synergies_fp Man page Source code
calculate_models_synergies_tn Man page Source code
calculate_models_synergies_tp Man page Source code
construct_network Man page Source code
count_models_that_predict_synergies Man page Source code
emba Man page
filter_network Man page Source code
get_alt_drugname Man page Source code
get_avg_activity_diff_based_on_mcc_clustering Man page Source code
get_avg_activity_diff_based_on_specific_synergy_prediction Man page Source code
get_avg_activity_diff_based_on_synergy_set_cmp Man page Source code
get_avg_activity_diff_based_on_tp_predictions Man page Source code
get_avg_activity_diff_mat_based_on_mcc_clustering Man page Source code
get_avg_activity_diff_mat_based_on_specific_synergy_prediction Man page Source code
get_avg_activity_diff_mat_based_on_tp_predictions Man page Source code
get_avg_link_operator_diff_based_on_specific_synergy_prediction Man page Source code
get_avg_link_operator_diff_based_on_synergy_set_cmp Man page Source code
get_avg_link_operator_diff_mat_based_on_mcc_clustering Man page Source code
get_avg_link_operator_diff_mat_based_on_specific_synergy_predict Man page Source code
get_avg_link_operator_diff_mat_based_on_tp_predictions Man page Source code
get_biomarkers Man page Source code
get_biomarkers_per_type Man page Source code
get_edges_from_topology_file Man page Source code
get_fitness_from_models_dir Man page Source code
get_link_operators_from_models_dir Man page Source code
get_model_names Man page Source code
get_model_predictions Man page Source code
get_models_based_on_mcc_class_id Man page Source code
get_neighbors Man page Source code
get_node_colors Man page Source code
get_node_names Man page Source code
get_observed_model_predictions Man page Source code
get_observed_synergies Man page Source code
get_observed_synergies_per_cell_line Man page Source code
get_perf_biomarkers_per_cell_line Man page Source code
get_stable_state_from_models_dir Man page Source code
get_synergy_biomarkers_from_dir Man page Source code
get_synergy_biomarkers_per_cell_line Man page Source code
get_synergy_comparison_sets Man page Source code
get_synergy_subset_stats Man page Source code
get_unobserved_model_predictions Man page Source code
get_x_axis_values Man page Source code
is_comb_element_of Man page Source code
make_barplot_on_models_stats Man page Source code
make_barplot_on_synergy_subset_stats Man page Source code
plot_avg_link_operator_diff_graph Man page Source code
plot_avg_link_operator_diff_graphs Man page Source code
plot_avg_state_diff_graph Man page Source code
plot_avg_state_diff_graph_vis Man page Source code
plot_avg_state_diff_graphs Man page Source code
plot_mcc_classes_hist Man page Source code
print_biomarkers_per_predicted_synergy Man page Source code
print_model_and_drug_stats Man page Source code
update_biomarker_files Man page Source code
validate_observed_synergies_data Man page Source code
emba documentation built on March 26, 2020, 7:13 p.m.