make_barplot_on_models_stats: Bar plot of model stats

In emba: Ensemble Boolean Model Biomarker Analysis

Description

Use this function to produce a bar plot when the input is the result of using the table function to a numeric vector

Usage

make_barplot_on_models_stats(
  models.stats,
  cell.line = NULL,
  title,
  xlab,
  ylab,
  cont.values = FALSE,
  threshold = 0,
  ylim.add = 0
)

Arguments

models.stats	table object, the result of using table on a (numeric) vector. Usually it represents some models statistics summary - counts for each TP prediction value for example.
cell.line	string. The name of the cell line to be used in the title of the produced plot. Default value: NULL (the cell line name will not be added to the title)
title	string. The title of the plot
xlab	string. The title of the x-axis
ylab	string. The title of the y-axis
cont.values	logical. If TRUE, the values of the x-axis will be trimmed to 3 digits after the decimal point. Default value: FALSE.
threshold	integer. Values from the model.stats that are less or equal to the threshold will be pruned. Use it when there too many categories and the figure appears too dense. Default value: 0
ylim.add	integer. Signifies the height to add to the upper ylim parameter on the barplot, in addition to the maximum bar height across the whole plot. Default value is 0.

Examples

x = c(rep(1,100), rep(2,423), rep(3,231), rep(NaN,531))
make_barplot_on_models_stats(models.stats = table(x, useNA = "ifany"),
title = "True Positives Distribution across models",
xlab = "Number of TP values", ylab = "Number of models")

emba documentation built on Jan. 7, 2021, 9:09 a.m.