Description Usage Arguments Value Examples
Use this function to get the performance biomarkers from the respective files inside the given list of directories.
1 | get_perf_biomarkers_per_cell_line(biomarkers.dirs, node.names)
|
biomarkers.dirs |
a character vector of the biomarker directories, in the
form of {path}/cell_line_name/{dir}. The cell line name directory
should be different for each element of the vector as we use it to fill in the
|
node.names |
a character vector of the node names used in the analysis. The biomarker names taken from the files inside the given directories must be a subset of this vector. |
a data.frame, whose columns represent the network nodes and the rows the cell lines. Possible values for each cell line-node element are either 1 (active state biomarker), -1 (inhibited state biomarker) or 0 (not a biomarker).
1 2 3 | dir = system.file("extdata", "AGS", "bio", package = "emba", mustWork = TRUE)
res = get_perf_biomarkers_per_cell_line(biomarkers.dirs = c(dir),
node.names = paste0("x", 1:20))
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