plot_avg_link_operator_diff_graphs: Plot the graphs from an average link operator differences...

In emba: Ensemble Boolean Model Biomarker Analysis

Description

This function presents a convenient way to use the plot_avg_link_operator_diff_graph function multiple times.

Usage

plot_avg_link_operator_diff_graphs(net, diff.mat, layout = NULL)

Arguments

net	igraph graph object
diff.mat	a matrix whose rows are vectors of average node link operator differences between two groups of models based on some kind of classification (e.g. number of TP predictions) and whose names are set in the rownames attribute of the matrix (usually denoting the different classification groups, e.g. (1,2) means the models that predicted 1 TP synergy vs the models that predicted 2 TP synergies, if the classification is done by number of TP predictions). The columns represent the network's node names. Could be the result of using the function get_avg_link_operator_diff_mat_based_on_tp_predictions.
layout	a (nx2) numeric matrix of x-y coordinates (2 columns) for each of the nodes (n) in the net igraph object. If NULL, we use the default layout provided by layout_nicely.

See Also

Other network plotting functions: plot_avg_link_operator_diff_graph(), plot_avg_state_diff_graph_vis(), plot_avg_state_diff_graphs(), plot_avg_state_diff_graph()

emba documentation built on Jan. 7, 2021, 9:09 a.m.