print_biomarkers_per_predicted_synergy: Print biomarkers for each predicted synergy

In emba: Ensemble Boolean Model Biomarker Analysis

Description

Print biomarkers for each predicted synergy

Usage

print_biomarkers_per_predicted_synergy(
  biomarkers.dir,
  predicted.synergies,
  html.output = TRUE
)

Arguments

biomarkers.dir	string. It specifies the full path name (without the ending character /) of the directory which holds the biomarker files for each drug combination in the predicted.synergies. The biomarker files must be formatted as: %drug.comb%_biomarkers_active or %drug.comb%_biomarkers_inhibited, where %drug.comb% is an element of the predicted.synergies vector. If the files are not properly formatted or don't even exist, zero biomarkers are reported.
predicted.synergies	a character vector of the synergies (drug combination names) that were predicted by at least one of the models in the dataset.
html.output	logical. If TRUE, it makes the printed output nice for an HTML document. Default value: TRUE.

emba documentation built on Jan. 7, 2021, 9:09 a.m.