logLik.HatchingSuccess: Return -log L of a fit

In embryogrowth: Tools to Analyze the Thermal Reaction Norm of Embryo Growth

Return -log L of a fit

Description

Set of functions to study the hatching success.

Usage

## S3 method for class 'HatchingSuccess'
logLik(object, ...)

Arguments

object	The return of a fit done with fitHS.
...	Not used

Details

logLik.HatchingSuccess returns -log L of a fit

Value

Return -log L of a fit

Author(s)

Marc Girondot

See Also

Other Hatching success: HatchingSuccess.MHmcmc(), HatchingSuccess.MHmcmc_p(), HatchingSuccess.fit(), HatchingSuccess.lnL(), HatchingSuccess.model(), nobs.HatchingSuccess(), predict.HatchingSuccess()

Examples

## Not run: 
library(embryogrowth)
totalIncubation_Cc <- subset(DatabaseTSD, 
                             Species=="Caretta caretta" & 
                               Note != "Sinusoidal pattern" & 
                               !is.na(Total) & Total != 0)

par <- c(S.low=0.5, S.high=0.3, 
         P.low=25, deltaP=10, MaxHS=0.8)
         
HatchingSuccess.lnL(par=par, data=totalIncubation_Cc)

g <- HatchingSuccess.fit(par=par, data=totalIncubation_Cc)

HatchingSuccess.lnL(par=g$par, data=totalIncubation_Cc)

t <- seq(from=20, to=40, by=0.1)
CIq <- predict(g, temperature=t)

par(mar=c(4, 4, 1, 1), +0.4)
plot(g)

## End(Not run)

embryogrowth documentation built on Sept. 11, 2024, 8:16 p.m.