resultNest_4p_trigo: Result of the fit using the nest database using trigonometric...
In embryogrowth: Tools to Analyze the Thermal Reaction Norm of Embryo Growth

resultNest_4p_trigo

R Documentation

Result of the fit using the nest database using trigonometric function

Description

Fit using the nest database using trigonometric function

Usage

resultNest_4p_trigo

Format

A list with fitted information about data(nest)

Details

Result of the fit using the nest database using trigonometric function

Author(s)

Marc Girondot marc.girondot@universite-paris-saclay.fr

References

Girondot, M., & Kaska, Y. (2014). A model to predict the thermal reaction norm for the embryo growth rate from field data. Journal of Thermal Biology, 45, 96-102. doi: 10.1016/j.jtherbio.2014.08.005

Examples

## Not run: 
library(embryogrowth)
data(nest)
formated <- FormatNests(nest)
x <- ChangeSSM(temperatures = (200:350)/10,
               parameters = resultNest_4p_SSM$par,
               initial.parameters = structure(c(3, 20, 40, 32), 
                         .Names = c("Max", "LengthB", "LengthE", "Peak")), 
               control=list(maxit=1000))
pfixed <- c(rK=2.093313)
resultNest_4p_trigo <- searchR(parameters=x$par, fixed.parameters=pfixed, 
                         temperatures=formated, integral=integral.Gompertz, M0=1.7, 
                         hatchling.metric=c(Mean=39.33, SD=1.92))
plotR(resultNest_4p_trigo, ylim=c(0, 3))
plotR(resultNest_4p_trigo, ylim=c(0, 3), ylimH = c(0, 0.9), show.hist=TRUE)
compare_AIC(SSM=resultNest_4p_SSM, trigonometric=resultNest_4p_trigo)

## End(Not run)

embryogrowth documentation built on Sept. 11, 2024, 8:16 p.m.