Man pages for epiGWAS
Robust Methods for Epistasis Detection
| BOOST | Implements BOOST SNP-SNP interaction test |
| cond_prob | Computes the propensity scores |
| epiGWAS | Runs a selection of epistasis detection methods in a joint... |
| fast_HMM | Fits a HMM to a genotype dataset by calling fastPHASE |
| forward | Applies the forward algorithm to a genotype dataset |
| forward_sample | Applies the forward algorithm to a single observation |
| gen_model | Samples effect sizes for the disease model |
| genotypes | Simulated genotypes |
| maf | SNP minor allele frequencies |
| merge_cluster | Merges a number of clusters around the target |
| modified_outcome | Implements the modified outcome approach |
| normalized_outcome | Implements the normalized modified outcome approach |
| OWL | Implements the outcome weighted learning approach |
| propensity | propensity scores |
| robust_outcome | Implements the robust modified outcome approach |
| sample_SNP | Samples causal SNPs with different effect types |
| shifted_outcome | Implements the shifted modified outcome approach |
| sim_phenotype | Simulates a binary phenotype |
| stabilityBIG | Computes the area under the stability path for all covariates |
| stabilityGLM | Computes the area under the stability path for all covariates |
| subsample | Creates multiple subsamples without replacement |
