Man pages for epiGWAS
Robust Methods for Epistasis Detection

BOOSTImplements BOOST SNP-SNP interaction test
cond_probComputes the propensity scores
epiGWASRuns a selection of epistasis detection methods in a joint...
fast_HMMFits a HMM to a genotype dataset by calling fastPHASE
forwardApplies the forward algorithm to a genotype dataset
forward_sampleApplies the forward algorithm to a single observation
gen_modelSamples effect sizes for the disease model
genotypesSimulated genotypes
mafSNP minor allele frequencies
merge_clusterMerges a number of clusters around the target
modified_outcomeImplements the modified outcome approach
normalized_outcomeImplements the normalized modified outcome approach
OWLImplements the outcome weighted learning approach
propensitypropensity scores
robust_outcomeImplements the robust modified outcome approach
sample_SNPSamples causal SNPs with different effect types
shifted_outcomeImplements the shifted modified outcome approach
sim_phenotypeSimulates a binary phenotype
stabilityBIGComputes the area under the stability path for all covariates
stabilityGLMComputes the area under the stability path for all covariates
subsampleCreates multiple subsamples without replacement
epiGWAS documentation built on Dec. 16, 2018, 5:03 p.m.