BOOST | Implements BOOST SNP-SNP interaction test |
cond_prob | Computes the propensity scores |
epiGWAS | Runs a selection of epistasis detection methods in a joint... |
fast_HMM | Fits a HMM to a genotype dataset by calling fastPHASE |
forward | Applies the forward algorithm to a genotype dataset |
forward_sample | Applies the forward algorithm to a single observation |
gen_model | Samples effect sizes for the disease model |
genotypes | Simulated genotypes |
maf | SNP minor allele frequencies |
merge_cluster | Merges a number of clusters around the target |
modified_outcome | Implements the modified outcome approach |
normalized_outcome | Implements the normalized modified outcome approach |
OWL | Implements the outcome weighted learning approach |
propensity | propensity scores |
robust_outcome | Implements the robust modified outcome approach |
sample_SNP | Samples causal SNPs with different effect types |
shifted_outcome | Implements the shifted modified outcome approach |
sim_phenotype | Simulates a binary phenotype |
stabilityBIG | Computes the area under the stability path for all covariates |
stabilityGLM | Computes the area under the stability path for all covariates |
subsample | Creates multiple subsamples without replacement |
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