propensity: propensity scores

Description Usage Format Examples

Description

To obtain the scores for the samples in genotypes, we first remove all SNPs in the genomic interval [18038910, 18288361] to alleviate linkage disequilibrium around the target SNP rs2535708 (position 18184169). Afterwards, we apply fast_HMM followed by cond_prob. The results are stored in propensity.

Usage

1

Format

a numeric vector

Examples

1

Example output



epiGWAS documentation built on Sept. 8, 2019, 5:02 p.m.