Description Usage Arguments Value Examples

The purpose of the function `merge_cluster`

is to
define an enlarged window of SNPs which
are in linkage disequilibrium with the target. It replaces the indices of neighbor
clusters with `center`

, the target cluster index. The neighborhood is defined
according to the parameter `k`

(see Arguments for more details). Subsequently,
we filter them out for the estimate of the propensity scores.

1 | ```
merge_cluster(clusters, center, k = 3)
``` |

`clusters` |
vector of cluster memberships. Typically, the output
of |

`center` |
the target variant cluster |

`k` |
vector or integer. if |

The updated cluster membership vector. The cluster indexing is also updated so that the maximum cluster index is equal to the total number of clusters after merging.

1 2 3 | ```
hc <- hclust(dist(USArrests))
clusters <- cutree(hc, k = 10)
merge_cluster(clusters, center=5, k=2)
``` |

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