Man pages for epinetr
Epistatic Network Modelling with Forward-Time Simulation
| addEffects | Attach additive effects to population. |
| attachEpiNet | Attach epistatic network to population. |
| epinetr | epinetr |
| geno100snp | Example genotype matrix. |
| getAddCoefs | Get additive coefficients. |
| getAddOffset | Retrieve additive offset. |
| getAlleleFreqRun | Get allele frequencies. |
| getComponents | Get phenotypic components. |
| getEpiNet | Epistatic network retrieval. |
| getEpiOffset | Retrieve epistatic offset. |
| getEpistasis | Calculate epistatic interactions. |
| getGeno | Get population unphased genotypes. |
| getHaplo | Retrieve haplotypes. |
| getIncMatrix | Incidence matrix retrieval. |
| getInteraction | Retrieve interaction values. |
| getPedigree | Get population pedigree. |
| getPhased | Get population phased genotypes. |
| getQTL | QTL retrieval. |
| getSubPop | Get subpopulation |
| loadGeno | Load epinetr genotype file. |
| map100snp | Example map. |
| plot.EpiNet | Plot epistatic network. |
| plot.Population | Plot phenotypic value for a population. |
| Population | Population constructor. |
| print.Population | Print function for population. |
| rincmat100snp | Example incidence matrix. |
| runSim | Run simulation on population. |
