View source: R/Population_getters.R
getHaplo | R Documentation |
Retrieve haplotypes from the population.
getHaplo(pop)
pop |
a valid |
Retrieves the haplotypes from both the population which, when added together, form the genotypes.
A list is returned with two elements, corresponding to the two haplotype matrices.
Dion Detterer, Paul Kwan, Cedric Gondro
getAddCoefs
, getAddOffset
, getPhased
, getGeno
# Construct a new population with additive effects pop <- Population( popSize = 20, map = map100snp, QTL = 20, broadH2 = 0.4, narrowh2 = 0.4, traitVar = 40, alleleFrequencies = runif(100, 0.05, 0.5) ) pop <- addEffects(pop) # Find the additive contribution to the individuals' phenotypes hap <- getHaplo(pop) hap <- (hap[[1]] + hap[[2]])[, getQTL(pop)$Index] (hap %*% getAddCoefs(pop))[, 1] + getAddOffset(pop)
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