getAlleleFreqRun: Get allele frequencies.

In epinetr: Epistatic Network Modelling with Forward-Time Simulation

Get allele frequencies.

Description

Get allele frequencies across a simulation run.

Usage

getAlleleFreqRun(pop)

Arguments

pop	a Population object as returned by a previous simulation run.

Details

Retrieves the allele frequencies in each generation across a simulation run.

Value

Returns a matrix of allele frequencies, one generation per row.

Author(s)

Dion Detterer, Paul Kwan, Cedric Gondro

See Also

runSim

Examples

# Construct a population with additive and epistatic effects
pop <- Population(
  popSize = 200, map = map100snp, QTL = 20,
  alleleFrequencies = runif(100),
  broadH2 = 0.9, narrowh2 = 0.6, traitVar = 40
)
pop <- addEffects(pop)
pop <- attachEpiNet(pop)

# Run the simulator
pop2 <- runSim(pop, generations = 150)

af <- getAlleleFreqRun(pop2)

epinetr documentation built on March 18, 2022, 7:01 p.m.