ergm.allstats: Calculate all possible vectors of statistics on a network for...

In ergm: Fit, Simulate and Diagnose Exponential-Family Models for Networks

Calculate all possible vectors of statistics on a network for an ERGM

Description

ergm.allstats calculates the sufficient statistics of an ERGM over the network's sample space.

ergm.exact() uses ergm.allstats() to calculate the exact loglikelihood, evaluated at eta.

Usage

ergm.allstats(formula, constraints = ~., zeroobs = TRUE, force = FALSE, ...)

ergm.exact(eta, formula, constraints = ~., statmat = NULL, weights = NULL, ...)

Arguments

formula, constraints	An ERGM formula and (optionally) a constraint specification formulas. See ergm(). This function supports only dyad-independent constraints.
zeroobs	Logical: Should the vectors be centered so that the network passed in the formula has the zero vector as its statistics?
force	Logical: Should the algorithm be run even if it is determined that the problem may be very large, thus bypassing the warning message that normally terminates the function in such cases?
...	further arguments, passed to ergm_model().
eta	vector of canonical parameter values at which the loglikelihood should be evaluated.
statmat, weights	outputs from ergm.allstats(): if passed, used in lieu of running it.

Details

The mechanism for doing this is a recursive algorithm, where the number of levels of recursion is equal to the number of possible dyads that can be changed from 0 to 1 and back again. The algorithm starts with the network passed in formula, then recursively toggles each edge twice so that every possible network is visited.

ergm.allstats() and ergm.exact() should only be used for small networks, since the number of possible networks grows extremely fast with the number of nodes. An error results if it is used on a network with more than 31 free dyads, which corresponds to a directed network of more than 6 nodes or an undirected network of more than 8 nodes; use force=TRUE to override this error.

In case ergm.exact() is to be called repeatedly, for instance by an optimization routine, it is preferable to call ergm.allstats() first, then pass statmat and weights explicitly to avoid repeatedly calculating these objects.

Value

ergm.allstats() returns a list object with these two elements:

weights	integer of counts, one for each row of statmat telling how many networks share the corresponding vector of statistics.
statmat	matrix in which each row is a unique vector of statistics.

ergm.exact() returns the exact value of the loglikelihood, evaluated at eta.

Examples

# Count by brute force all the edge statistics possible for a 7-node 
# undirected network
mynw <- network.initialize(7, dir = FALSE)
system.time(a <- ergm.allstats(mynw~edges))

# Summarize results
rbind(t(a$statmat), .freq. = a$weights)

# Each value of a$weights is equal to 21-choose-k, 
# where k is the corresponding statistic (and 21 is 
# the number of dyads in an 7-node undirected network).  
# Here's a check of that fact:
as.vector(a$weights - choose(21, t(a$statmat)))

# Dyad-independent constraints are also supported:
system.time(a <- ergm.allstats(mynw~edges, constraints = ~fixallbut(cbind(1:2,2:3))))
rbind(t(a$statmat), .freq. = a$weights)


# Simple ergm.exact output for this network.
# We know that the loglikelihood for my empty 7-node network
# should simply be -21*log(1+exp(eta)), so we may check that
# the following two values agree:
-21*log(1+exp(.1234)) 
ergm.exact(.1234, mynw~edges, statmat=a$statmat, weights=a$weights)

ergm documentation built on Oct. 7, 2024, 5:08 p.m.