API for ern
Effective Reproduction Number Estimation
| Global functions | |
|---|---|
| .onAttach | Source code |
| agg_to_daily | Man page Source code |
| attach_startdate_agg | Man page Source code |
| attach_t | Man page Source code |
| attach_t_agg | Man page Source code |
| check_cl.input_format | Man page Source code |
| check_df.input_daily | Man page Source code |
| check_dist | Man page Source code |
| check_for_deconv | Man page Source code |
| check_prm.R | Man page Source code |
| check_prm.daily | Man page Source code |
| check_prm.daily.check | Man page Source code |
| check_prm.smooth | Man page Source code |
| check_ww.conc_format | Source code |
| cl.data | Man page |
| correct_underreporting | Man page Source code |
| deconv | Man page Source code |
| deconv_ww_inc | Man page Source code |
| deconvolution_RL | Man page Source code |
| def_dist | Man page Source code |
| draw_from_gamma | Man page Source code |
| estimate_R_cl | Man page Source code |
| estimate_R_cl_rep | Man page Source code |
| estimate_R_cl_single | Man page Source code |
| estimate_R_ww | Man page Source code |
| extract_mcmc_values | Man page Source code |
| fit_jags_aggreg | Man page Source code |
| get_discrete_dist | Man page Source code |
| get_realizations | Man page Source code |
| get_use_dates | Man page Source code |
| inc2R_one_iter | Man page Source code |
| incidence_to_R | Man page Source code |
| linear_int_daily | Man page Source code |
| na_to_0 | Man page Source code |
| plot_diagnostic_cl | Man page Source code |
| plot_diagnostic_ww | Man page Source code |
| plot_dist | Man page Source code |
| plot_gelman_rubin | Man page Source code |
| plot_traces | Man page Source code |
| reports_to_incidence | Man page Source code |
| reshape_fit_jags | Man page Source code |
| sample_a_dist | Man page Source code |
| sample_from_dist | Man page Source code |
| sample_post_ee | Man page Source code |
| smooth_cl | Man page Source code |
| smooth_with_loess | Source code |
| smooth_with_rollmean | Source code |
| smooth_ww | Man page Source code |
| summarise_by_date_iters | Man page Source code |
| summarise_report_counts | Man page Source code |
| summary_postsamples | Man page Source code |
| ww.data | Man page |
