Files in ern
Effective Reproduction Number Estimation
MD5
NAMESPACE
DESCRIPTION
LICENSE
R/smooth.R
R/estimate_R_ww.R
R/deconvolution_RL.R
R/check_args.R
R/setup-incidence_to_R.R
R/data.R
R/estimate_R_cl_rep.R
R/estimate_R_cl.R
R/mcmcdiag.R
R/attach_t.R
R/plot.R
R/estimate_R_cl_single.R
R/linear_int_daily.R
R/get_use_dates.R
R/incidence_to_R.R
R/deconv_ww_inc.R
R/summary_postsamples.R
R/agg_to_daily.R
R/zzz.R
R/globals.R
R/distributions.R
inst/CITATION
inst/doc/est-rt.Rmd
inst/doc/est-rt.R
inst/doc/est-rt.html
build/vignette.rds
tests/testthat.R
tests/testdata/ww_test_params.RData
tests/testthat/test-estimate_R_cl.R
tests/testthat/test-estimate_R_cl_single.R
tests/testthat/test-plot.R
tests/testthat/setup-cl.daily.R
tests/testthat/helper-test_output_tibble.R
tests/testthat/test-distributions.R
tests/testthat/test-get_use_dates.R
tests/testthat/test-smooth.R
tests/testthat/test-agg_to_daily.R
tests/testthat/test-deconvolution_RL.R
tests/testthat/setup-prm.R
tests/testthat/setup-cl.data.R
tests/testthat/test-incidence_to_R.R
tests/testthat/setup-dist.R
tests/testthat/test-estimate_R_cl_rep.R
tests/testthat/test-estimate_R_ww.R
tests/testthat/test-check_args.R
vignettes/est-rt.Rmd
vignettes/figs/WWFig1.PNG
vignettes/figs/manica-table.png
data/ww.data.rda
data/cl.data.rda
man/agg_to_daily.Rd
man/sample_post_ee.Rd
man/deconv.Rd
man/sample_a_dist.Rd
man/deconv_ww_inc.Rd
man/attach_t_agg.Rd
man/estimate_R_cl_single.Rd
man/plot_dist.Rd
man/summarise_by_date_iters.Rd
man/ww.data.Rd
man/attach_t.Rd
man/inc2R_one_iter.Rd
man/plot_diagnostic_cl.Rd
man/def_dist.Rd
man/estimate_R_cl.Rd
man/check_prm.daily.Rd
man/get_use_dates.Rd
man/get_discrete_dist.Rd
man/incidence_to_R.Rd
man/smooth_cl.Rd
man/estimate_R_ww.Rd
man/check_prm.smooth.Rd
man/cl.data.Rd
man/check_df.input_daily.Rd
man/correct_underreporting.Rd
man/sample_from_dist.Rd
man/plot_traces.Rd
man/check_cl.input_format.Rd
man/na_to_0.Rd
man/check_prm.daily.check.Rd
man/attach_startdate_agg.Rd
man/check_prm.R.Rd
man/check_dist.Rd
man/linear_int_daily.Rd
man/estimate_R_cl_rep.Rd
man/summary_postsamples.Rd
man/check_for_deconv.Rd
man/plot_gelman_rubin.Rd
man/smooth_ww.Rd
man/reports_to_incidence.Rd
man/fit_jags_aggreg.Rd
man/reshape_fit_jags.Rd
man/get_realizations.Rd
man/draw_from_gamma.Rd
man/plot_diagnostic_ww.Rd
man/deconvolution_RL.Rd
man/extract_mcmc_values.Rd
man/summarise_report_counts.Rd
