ExprsArray-class: An S4 class to store feature and annotation data

Description Usage Arguments Methods (by generic) Slots See Also

Description

An S4 class to store feature and annotation data

Usage

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## S4 method for signature 'ExprsArray'
show(object)

## S4 method for signature 'ExprsArray,ANY,ANY,ANY'
x[i, j]

## S4 method for signature 'ExprsArray'
x$name

## S4 method for signature 'ExprsArray'
subset(x, subset, select)

## S4 method for signature 'ExprsArray,missing'
plot(x, y, a = 1, b = 2, c = 3, ...)

## S4 method for signature 'ExprsArray'
summary(object)

## S4 method for signature 'ExprsArray'
getFeatures(object)

Arguments

object, x

An object of class ExprsArray.

i, j

Subsets entire ExprsArray object via object@annot[i, j]. Returns object@annot[, j] if argument i is missing.

name

Returns object@annot[, name].

subset

Subsets entire ExprsArray object via object@annot[subset, ]. Can be used to rearrange feature order.

select

Subsets entire ExprsArray object via object@annot[, select]. Can be used to rearrange subject order.

y

Leave missing. Argument exists because of plot generic definition.

a, b, c

A numeric scalar. Indexes the first, second, and third dimensions to plot. Set c = 0 to plot two dimensions.

...

Additional arguments passed toplot or lattice::cloud.

Methods (by generic)

Slots

exprs

A matrix. Stores the feature data.

annot

A data.frame. Stores the annotation data.

preFilter

Typically a list. Stores feature selection history.

reductionModel

Typically a list. Stores dimension reduction history.

See Also

ExprsArray-class
ExprsModel-class
ExprsPipeline-class
ExprsEnsemble-class
ExprsPredict-class
RegrsPredict-class


exprso documentation built on May 1, 2019, 7:11 p.m.