LRparamlink: Calculates likelihoods and likelihood ratios using...

In fam2r: From 'Familias' to R

Description

Typically export from windows 'Familias' is converted to linkdat using Familias2linkdat prior to calling the function.

Usage

LRparamlink(x, ref, markers)

Arguments

x	A list of pedigrees, in the form of linkdat objects.
ref	Integer. Index of the pedigree to be used in the denominator of LR.
markers	Integer vector. Index for markers for which calculations should be done.

Value

LR	Likelihood ratios.
LRperMarker	Likelihood ratios for each marker.
likelihoodsPerSystem	Likelihoods for each marker.
time	User, system and elapsed time.

Author(s)

Magnus Dehli Vigeland and Thore Egeland

Examples

data(adoption)
x = Familias2linkdat(adoption$pedigrees, adoption$datamatrix, adoption$loci)
result = LRparamlink(x, ref=2)
# Only marker 11 and 33
result33 = LRparamlink(x, ref=2, marker=c(11,33))

fam2r documentation built on May 2, 2019, 1:09 p.m.