missing.person.plot: Plots hypotheses for family reunion

In fam2r: From 'Familias' to R

Description

A panel with two plots are generated. To the left, the one corresponding to the person of interest (POI) being identical to the Missing Person (MP). To the right these persons are urelated.

Usage

missing.person.plot(ped_related, missing, id.labels=NULL,
  available="shaded", marker=NULL, width=c(4,4,1), newdev=TRUE,
	frametitles=c("H1: POI related", "H2:POI unrelated"), ...)
	
internalID(x, orig.ids)
getSex(x, orig.ids) 

Arguments

ped_related	A linkdat object.
missing	An integer giving the MP.
id.labels	Character vector naming individuals in plot.
available	Character determining how genotyped individuals are displayed.
marker	Integer vector indicating markers to be displayed.
width	A numeric vector of relative widths of the subplots. Recycled to length(plot.arg.list) if necessary, before passed on to layout. Note that the vector does not need to sum to 1.
newdev	logical. If TRUE, new plot window is generated.
frametitles	A character vector of length two giving titles.
...	Further arguments passed on to each call to plotPedList
x	linkdat object.
orig.ids	Character or integer vector,

Details

See example in the Examples section below.

Author(s)

Magnus Dehli Vigeland and Thore Egeland

See Also

plotPedList

Examples

data(grandmother)
pedigrees = grandmother$pedigrees
datamatrix = grandmother$datamatrix
datamatrix[3,]=1
loci = grandmother$loci
x1 = Familias2linkdat(pedigrees, datamatrix, loci)
missing.person.plot(x1[[1]],2, available="shaded", frametitles=c("",""), 
  newdev=TRUE, width=c(1,2), marker=1)

Example output

Loading required package: Familias
Loading required package: kinship2
Loading required package: Matrix
Loading required package: quadprog
Loading required package: paramlink
Loading required package: Rsolnp

fam2r documentation built on May 2, 2019, 1:09 p.m.