predict.cocktail: make predictions from a "cocktail" object.
In fastcox: Lasso and Elastic-Net Penalized Cox's Regression in High Dimensions Models using the Cocktail Algorithm
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
Description
Similar to other predict methods, this functions predicts fitted values, link function and more from a fitted cocktail object. This function is modified based on the predict function from the glmnet package.
Usage
1
2
Arguments
object
fitted cocktail model object.
newx
matrix of new values for x at which predictions are
to be made. Must be a matrix. This argument is not used for type=c("coefficients","nonzero")
s
value(s) of the penalty parameter lambda at which
predictions are required. Default is the entire sequence used to
create the model.
type
type of prediction required.
Type "link" gives the linear predictors for Cox's model.
Type "response" gives the fitted relative-risk for Cox's model.
Type "coefficients" computes the coefficients at the requested values for s.
Type "nonzero" returns a list of the indices of the nonzero coefficients for each value of s.
...
Not used. Other arguments to predict.
Details
s is the new vector at which predictions are requested. If s is not in the lambda sequence used for fitting the model, the predict function will use linear interpolation to make predictions. The new values are interpolated using a fraction of predicted values from both left and right lambda indices.
Value
The object returned depends on type.
Author(s)
Yi Yang and Hui Zou
Maintainer: Yi Yang <yi.yang6@mcgill.ca>
References
Yang, Y. and Zou, H. (2013),
"A Cocktail Algorithm for Solving The Elastic Net Penalized Cox's Regression in High Dimensions", Statistics and Its Interface, 6:2, 167-173.
https://github.com/emeryyi/fastcox
Friedman, J., Hastie, T. and Tibshirani, R. (2008)
"Regularization Paths for Generalized Linear Models via Coordinate
Descent", http://www.stanford.edu/~hastie/Papers/glmnet.pdf
Journal of Statistical Software, Vol. 33(1), 1-22 Feb 2010
http://www.jstatsoft.org/v33/i01/
Simon, N., Friedman, J., Hastie, T., Tibshirani, R. (2011)
"Regularization Paths for Cox's Proportional Hazards Model via
Coordinate Descent", Journal of Statistical Software, Vol. 39(5)
1-13
http://www.jstatsoft.org/v39/i05/
See Also
coef method
Examples
1
2
3
4
Example output
$s0
NULL
$s1
[1] 1 45
$s2
[1] 1 45
$s3
[1] 1 7 45
$s4
[1] 1 7 45 55
$s5
[1] 1 7 45 55
$s6
[1] 1 7 12 45 55
$s7
[1] 1 7 12 45 55
$s8
[1] 1 7 12 45 55
$s9
[1] 1 7 12 45 55
$s10
[1] 1 7 12 17 42 45 55
$s11
[1] 1 7 12 14 17 42 45 55 59
$s12
[1] 1 7 12 14 17 42 45 55 59 74 91
$s13
[1] 1 7 12 14 17 42 45 55 59 74 91 100
$s14
[1] 1 7 10 12 14 17 42 45 55 59 74 91 100
$s15
[1] 1 2 7 10 12 14 17 28 42 45 55 59 74 91 100
$s16
[1] 1 2 7 10 12 14 17 28 42 45 55 59 74 91 100
$s17
[1] 1 2 7 10 12 14 17 28 42 45 55 59 71 74 91 100
$s18
[1] 1 2 7 10 12 14 17 28 42 45 55 59 71 74 91 98 100
$s19
[1] 1 2 7 10 12 14 17 28 42 45 55 59 71 74 91 96 98 100
$s20
[1] 1 2 7 10 12 14 17 26 28 42 45 55 56 59 71 74 91 96 98
[20] 100
$s21
[1] 1 2 7 10 12 14 17 26 28 42 45 55 56 59 71 74 91 96 98
[20] 100
$s22
[1] 1 2 5 7 10 12 14 17 26 28 42 45 55 56 59 71 74 91 96
[20] 98 100
$s23
[1] 1 2 5 7 10 12 14 17 26 28 30 42 44 45 55 56 59 71 74
[20] 84 91 96 98 100
$s24
[1] 1 2 5 7 10 12 14 17 26 28 30 31 42 44 45 55 56 59 71
[20] 74 77 84 91 96 98 100
$s25
[1] 1 2 5 7 10 12 14 17 26 28 30 31 42 44 45 55 56 59 71
[20] 74 77 84 91 96 98 100
$s26
[1] 1 2 5 7 10 12 14 17 23 26 28 30 31 42 44 45 55 56 59
[20] 71 74 77 84 91 96 98 100
$s27
[1] 1 2 5 7 10 12 14 17 23 26 28 30 31 39 42 44 45 55 56
[20] 59 71 74 77 84 88 91 96 98 100
$s28
[1] 1 2 5 7 10 12 14 17 23 26 28 30 31 39 42 44 45 55 56
[20] 59 71 74 77 84 88 91 96 98 100
$s29
[1] 1 2 5 7 10 12 14 17 23 26 28 30 31 39 42 44 45 55 56
[20] 59 71 74 75 77 84 88 91 96 98 100
$s30
[1] 1 2 5 7 10 12 14 17 23 26 28 30 31 39 42 44 45 55 56
[20] 59 71 74 75 77 84 88 91 96 98 100
$s31
[1] 1 2 5 7 10 12 14 17 23 26 28 30 31 39 42 44 45 55 56
[20] 59 63 71 74 75 77 84 88 91 96 98 100
$s32
[1] 1 2 5 7 10 12 14 23 26 28 30 31 39 42 44 45 55 56 59
[20] 63 71 74 75 77 84 88 91 96 98 100
$s33
[1] 1 2 5 7 10 11 12 14 23 26 28 30 31 39 42 44 45 55 56
[20] 59 63 71 74 75 77 84 88 91 96 98 100
$s34
[1] 1 2 3 5 7 10 11 12 14 23 26 28 30 31 39 40 42 44 45
[20] 48 55 56 59 63 71 74 75 77 84 88 91 96 98 100
$s35
[1] 1 2 3 5 7 10 11 12 14 23 26 28 30 31 39 40 42 44 45
[20] 48 55 56 59 63 71 74 75 77 84 88 91 96 98 100
$s36
[1] 1 2 3 5 7 10 11 12 14 23 26 28 30 31 39 40 42 44 45
[20] 48 55 56 59 63 71 74 75 77 84 88 91 96 98 100
$s37
[1] 1 2 3 5 7 10 11 12 14 23 26 28 30 31 39 40 42 44 45
[20] 48 55 56 59 63 71 74 75 77 84 88 91 96 98 100
$s38
[1] 1 2 3 5 7 8 10 11 12 14 16 23 26 28 30 31 39 40 42
[20] 44 45 48 49 55 56 59 62 63 65 71 74 75 77 84 88 91 96 98
[39] 100
$s39
[1] 1 2 3 5 7 8 10 11 12 14 16 23 26 28 30 31 39 40 42
[20] 44 45 48 49 55 56 59 62 63 64 65 71 74 75 77 84 88 91 96
[39] 98 100
$s40
[1] 1 2 3 5 7 8 10 11 12 14 16 23 26 28 31 39 40 42 44
[20] 45 48 49 55 56 59 62 63 64 65 71 74 75 77 84 88 91 96 98
[39] 100
$s41
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 39 40
[20] 42 44 45 48 49 55 56 59 62 63 64 65 71 74 75 77 84 88 96
[39] 98 100
$s42
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 39 40
[20] 42 44 45 48 49 55 56 59 62 63 64 65 71 74 75 77 84 88 96
[39] 98 100
$s43
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 37 39
[20] 40 42 44 45 46 48 49 55 56 58 59 62 63 64 65 71 72 74 75
[39] 77 84 88 96 98 100
$s44
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 37 39
[20] 40 42 44 45 46 48 49 55 56 58 59 62 63 64 65 71 72 74 75
[39] 77 84 88 96 98 100
$s45
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 36 37
[20] 39 40 42 44 45 46 48 49 55 56 58 59 62 63 64 65 70 71 72
[39] 74 75 77 84 86 88 96 98 100
$s46
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 34 36
[20] 37 39 40 41 42 44 45 46 48 49 55 56 58 59 62 63 64 65 70
[39] 71 72 74 75 77 84 86 88 96 98 100
$s47
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 34 36
[20] 37 39 40 41 42 44 45 46 48 49 55 56 58 59 62 63 64 65 70
[39] 71 72 73 74 75 77 84 86 88 96 98 100
$s48
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 34 36
[20] 37 39 40 41 42 44 45 46 47 48 49 55 56 58 59 62 63 64 65
[39] 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s49
[1] 1 2 3 5 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34
[20] 36 37 39 40 41 42 44 45 46 47 48 49 55 56 58 59 62 63 64
[39] 65 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s50
[1] 1 2 3 5 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34
[20] 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59 62 63
[39] 64 65 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s51
[1] 1 2 3 5 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34
[20] 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59 62 63
[39] 64 65 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s52
[1] 1 2 3 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34 36
[20] 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59 62 63 64
[39] 65 66 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s53
[1] 1 2 3 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34 36
[20] 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59 62 63 64
[39] 65 66 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s54
[1] 1 2 3 5 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34
[20] 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59 62 63
[39] 64 65 66 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s55
[1] 1 2 3 5 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34
[20] 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59 62 63
[39] 64 65 66 70 71 72 73 74 75 77 83 84 86 88 95 96 98 100
$s56
[1] 1 2 3 5 7 8 10 11 12 14 15 16 17 18 23 26 27 28 31
[20] 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59
[39] 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 88 95 96 98
[58] 100
$s57
[1] 1 2 3 5 7 8 10 11 12 14 15 16 17 18 23 26 27 28 31
[20] 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59
[39] 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 88 93 95 96
[58] 98 100
$s58
[1] 1 2 3 5 7 8 10 11 12 14 15 16 17 18 23 26 27 28 31
[20] 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59
[39] 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93 95
[58] 96 98 100
$s59
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s60
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s61
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s62
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s63
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s64
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s65
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s66
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 90
[58] 93 95 96 98 100
$s67
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 90
[58] 93 95 96 98 100
$s68
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 90
[58] 93 95 96 98 100
$s69
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 90
[58] 93 95 96 98 100
$s70
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55
[39] 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87
[58] 88 90 93 95 96 98 100
$s71
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55
[39] 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87
[58] 88 90 93 95 96 98 100
$s72
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55
[39] 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87
[58] 88 90 93 95 96 98 100
$s73
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55
[39] 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87
[58] 88 90 93 95 96 98 100
$s74
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55
[39] 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87
[58] 88 90 93 94 95 96 98 100
$s75
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s76
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s77
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s78
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s79
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s80
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s81
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s82
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s83
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s84
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s85
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s86
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s87
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s88
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s89
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s90
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s91
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s92
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s93
[1] 1 2 3 4 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26
[20] 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52
[39] 54 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84
[58] 86 87 88 90 93 94 95 96 97 98 100
$s94
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 23
[20] 26 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49
[39] 52 54 55 56 58 59 62 63 64 65 66 67 70 71 72 73 74 75 77
[58] 83 84 86 87 88 90 93 94 95 96 97 98 100
$s95
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 23
[20] 26 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49
[39] 52 54 55 56 58 59 60 62 63 64 65 66 67 70 71 72 73 74 75
[58] 77 83 84 86 87 88 90 93 94 95 96 97 98 100
$s96
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 23
[20] 26 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49
[39] 52 54 55 56 58 59 60 62 63 64 65 66 67 70 71 72 73 74 75
[58] 77 83 84 86 87 88 90 92 93 94 95 96 97 98 100
$s97
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 23
[20] 26 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49
[39] 52 54 55 56 58 59 60 62 63 64 65 66 67 70 71 72 73 74 75
[58] 77 83 84 86 87 88 90 92 93 94 95 96 97 98 100
$s98
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 23
[20] 26 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49
[39] 52 54 55 56 58 59 60 62 63 64 65 66 67 70 71 72 73 74 75
[58] 77 83 84 86 87 88 90 92 93 94 95 96 97 98 100
$s99
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 23
[20] 26 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49
[39] 52 54 55 56 58 59 60 62 63 64 65 66 67 70 71 72 73 74 75
[58] 77 83 84 86 87 88 90 92 93 94 95 96 97 98 100
s0 s1 s2 s3 s4 s5 s6 s7
[1,] 1 1.0071772 1.0138062 1.0162776 1.0137948 1.0173613 1.0284648 1.0411724
[2,] 1 1.0085466 1.0164244 1.0204196 1.0193087 1.0137390 0.9981481 0.9779583
[3,] 1 1.0021434 1.0049781 1.0061824 1.0059111 1.0201654 1.0352270 1.0481136
[4,] 1 0.9927692 0.9868190 0.9789941 0.9682762 0.9565943 0.9590135 0.9669902
[5,] 1 0.9853182 0.9702807 0.9560901 0.9425730 0.9277099 0.9145780 0.9027746
s8 s9 s10 s11 s12 s13 s14
[1,] 1.0534816 1.0654043 1.0769933 1.0712620 1.0553290 1.0425237 1.0413036
[2,] 0.9580681 0.9382723 0.9252344 0.9381715 0.9984776 1.0641310 1.1652444
[3,] 1.0604097 1.0721500 1.0834289 1.1033644 1.1546791 1.2108461 1.2483411
[4,] 0.9752592 0.9839825 0.9887672 1.0015633 1.0156773 1.0203529 1.0132680
[5,] 0.8915637 0.8809188 0.8729853 0.8719713 0.8553752 0.8367685 0.8245973
s15 s16 s17 s18 s19 s20 s21
[1,] 1.0430105 1.0468994 1.0514665 1.0570118 1.0530885 1.0415897 1.0237355
[2,] 1.2869694 1.4172269 1.5534375 1.7125283 1.8903265 2.0911139 2.3335691
[3,] 1.2757243 1.2976107 1.3186105 1.3512619 1.3805044 1.4081640 1.4347045
[4,] 0.9912623 0.9665460 0.9435596 0.9267030 0.9257300 0.9304902 0.9368666
[5,] 0.8312562 0.8436137 0.8575535 0.8728257 0.8986487 0.9277569 0.9555024
s22 s23 s24 s25 s26 s27 s28
[1,] 1.0057138 0.9897721 0.9768041 0.9632742 0.9476442 0.9351763 0.9201755
[2,] 2.5965085 2.8537132 3.1105810 3.3094320 3.5135419 3.7108843 3.9191244
[3,] 1.4594993 1.4800571 1.4910696 1.4813094 1.4776406 1.4729988 1.4668186
[4,] 0.9455815 0.9597916 0.9750166 0.9788509 0.9865537 0.9964370 1.0101404
[5,] 0.9863244 1.0324144 1.0907815 1.1739355 1.2547970 1.3381513 1.4326555
s29 s30 s31 s32 s33 s34 s35
[1,] 0.9074936 0.899085 0.8917094 0.8846055 0.8773223 0.8687813 0.8577652
[2,] 4.1404792 4.380314 4.6364035 4.9380891 5.2665345 5.6192554 6.0077547
[3,] 1.4598807 1.451292 1.4428824 1.4340623 1.4262489 1.4151032 1.4012636
[4,] 1.0249997 1.042008 1.0604707 1.0828850 1.1047651 1.1255828 1.1448226
[5,] 1.5325145 1.637764 1.7476527 1.8637741 1.9829067 2.1111324 2.2465367
s36 s37 s38 s39 s40 s41 s42
[1,] 0.845879 0.8336675 0.811240 0.7860199 0.7587272 0.7382511 0.7150757
[2,] 6.420698 6.8627513 7.329208 7.8254334 8.3509655 8.9293079 9.5832844
[3,] 1.386944 1.3721296 1.350616 1.3313857 1.3145559 1.2972948 1.2813333
[4,] 1.162490 1.1796399 1.185780 1.1880219 1.1907073 1.1859297 1.1808304
[5,] 2.386261 2.5313735 2.705967 2.8834970 3.0646730 3.2456715 3.4388437
s43 s44 s45 s46 s47 s48
[1,] 0.6913376 0.6668397 0.6445475 0.6254662 0.6088654 0.5903371
[2,] 10.3353832 11.2202376 12.2310684 13.3394554 14.5730052 15.9608756
[3,] 1.2647001 1.2428123 1.2231922 1.2026214 1.1795170 1.1549473
[4,] 1.1775438 1.1768188 1.1750288 1.1705966 1.1644943 1.1574295
[5,] 3.6471549 3.8897105 4.1792877 4.5107873 4.8616234 5.2390083
s49 s50 s51 s52 s53 s54
[1,] 0.5725764 0.5568251 0.5424775 0.5278639 0.5136136 0.5002052
[2,] 17.5431137 19.2967314 21.2668718 23.5378341 26.1344661 29.0436770
[3,] 1.1306378 1.1068736 1.0842438 1.0643020 1.0458155 1.0283727
[4,] 1.1494440 1.1421781 1.1355937 1.1303238 1.1261385 1.1228628
[5,] 5.6637566 6.1273519 6.6368583 7.2122682 7.8502625 8.5433615
s55 s56 s57 s58 s59 s60
[1,] 0.4873233 0.4747073 0.4619260 0.4492423 0.4362862 0.4230343
[2,] 32.3856437 36.2370356 40.6515923 45.7905940 51.5898715 58.2854278
[3,] 1.0116762 0.9958083 0.9812592 0.9663852 0.9497520 0.9323831
[4,] 1.1200121 1.1171885 1.1154107 1.1134865 1.1094742 1.1043158
[5,] 9.3215781 10.1941121 11.1433727 12.2065069 13.3592995 14.6432664
s61 s62 s63 s64 s65 s66
[1,] 0.4100071 0.3969547 0.3840540 0.3715819 0.3590370 0.3469326
[2,] 65.8458516 74.6166762 84.7491277 96.2583439 109.9283060 125.4535288
[3,] 0.9148438 0.8967537 0.8784169 0.8603333 0.8416226 0.8234090
[4,] 1.0984131 1.0918790 1.0847966 1.0773427 1.0693750 1.0609377
[5,] 16.0429895 17.6097918 19.3550114 21.2655287 23.4519440 25.8407487
s67 s68 s69 s70 s71 s72
[1,] 0.3342260 0.3213112 0.3086822 0.2966850 0.2851051 0.2736484
[2,] 143.7874794 165.5757301 190.8650351 220.4667122 254.6833526 295.8525928
[3,] 0.8047965 0.7855713 0.7664266 0.7471837 0.7282048 0.7088229
[4,] 1.0503082 1.0388797 1.0270599 1.0149957 1.0034619 0.9913761
[5,] 28.5264795 31.5916657 35.0033377 38.8260241 43.0570252 47.9358291
s73 s74 s75 s76 s77 s78
[1,] 0.2627666 0.2520880 0.2414813 0.2315972 0.2217161 0.2119663
[2,] 343.4943204 400.0580203 467.2883023 546.8295419 641.0629157 752.9680031
[3,] 0.6900239 0.6711793 0.6525446 0.6317762 0.6108553 0.5898130
[4,] 0.9792857 0.9669796 0.9536455 0.9364726 0.9182999 0.8993596
[5,] 53.3367800 59.4769880 66.4806430 74.3921129 83.3278842 93.4387796
s79 s80 s81 s82 s83
[1,] 0.2024139 0.1930996 0.1840502 0.1752834 0.1668156
[2,] 886.1530597 1045.0222701 1234.9618558 1462.5683874 1735.9306755
[3,] 0.5687615 0.5478019 0.5270186 0.5064810 0.4862375
[4,] 0.8798236 0.8598379 0.8395205 0.8189676 0.7982232
[5,] 104.8958878 117.9001248 132.6857724 149.5256742 168.7348468
s84 s85 s86 s87 s88
[1,] 0.1586188 0.1507118 0.1431037 0.1357928 0.1287757
[2,] 2064.9163959 2461.6280224 2941.1693541 3522.0999008 4227.3762013
[3,] 0.4663330 0.4467983 0.4276623 0.4089580 0.3907110
[4,] 0.7774582 0.7566549 0.7358290 0.7150322 0.6943090
[5,] 190.6841252 215.8127933 244.6098189 277.6633041 315.6607143
s89 s90 s91 s92 s93
[1,] 0.1220481 0.1156047 0.1094395 0.1034759 9.818831e-02
[2,] 5085.4473731 6131.6342232 7409.8674738 8996.2574250 1.092362e+04
[3,] 0.3729412 0.3556643 0.3388922 0.3224133 3.067248e-01
[4,] 0.6736988 0.6532371 0.6329560 0.6126148 5.931142e-01
[5,] 359.4074637 409.8485944 468.0944138 536.3519615 6.145877e+02
s94 s95 s96 s97 s98
[1,] 9.288784e-02 8.796320e-02 8.318506e-02 7.856019e-02 7.422258e-02
[2,] 1.333319e+04 1.626662e+04 1.989668e+04 2.446394e+04 3.006136e+04
[3,] 2.914472e-01 2.766870e-01 2.626468e-01 2.489802e-01 2.360771e-01
[4,] 5.737544e-01 5.544139e-01 5.356587e-01 5.170443e-01 4.991134e-01
[5,] 7.067690e+02 8.118347e+02 9.347554e+02 1.080368e+03 1.248192e+03
s99
[1,] 7.004751e-02
[2,] 3.713265e+04
[3,] 2.235271e-01
[4,] 4.813397e-01
[5,] 1.447501e+03
fastcox documentation built on May 2, 2019, 10:25 a.m.
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Description Usage Arguments Details Value Author(s) References See Also Examples
Description
Similar to other predict methods, this functions predicts fitted values, link function and more from a fitted cocktail object. This function is modified based on the predict function from the glmnet package.
Usage
1 2 |
Arguments
object |
fitted |
newx |
matrix of new values for |
s |
value(s) of the penalty parameter |
type |
type of prediction required.
|
... |
Not used. Other arguments to predict. |
Details
s is the new vector at which predictions are requested. If s is not in the lambda sequence used for fitting the model, the predict function will use linear interpolation to make predictions. The new values are interpolated using a fraction of predicted values from both left and right lambda indices.
Value
The object returned depends on type.
Author(s)
Yi Yang and Hui Zou
Maintainer: Yi Yang <yi.yang6@mcgill.ca>
References
Yang, Y. and Zou, H. (2013),
"A Cocktail Algorithm for Solving The Elastic Net Penalized Cox's Regression in High Dimensions", Statistics and Its Interface, 6:2, 167-173.
https://github.com/emeryyi/fastcox
Friedman, J., Hastie, T. and Tibshirani, R. (2008)
"Regularization Paths for Generalized Linear Models via Coordinate
Descent", http://www.stanford.edu/~hastie/Papers/glmnet.pdf
Journal of Statistical Software, Vol. 33(1), 1-22 Feb 2010
http://www.jstatsoft.org/v33/i01/
Simon, N., Friedman, J., Hastie, T., Tibshirani, R. (2011)
"Regularization Paths for Cox's Proportional Hazards Model via
Coordinate Descent", Journal of Statistical Software, Vol. 39(5)
1-13
http://www.jstatsoft.org/v39/i05/
See Also
coef method
Examples
1 2 3 4 |
Example output
$s0
NULL
$s1
[1] 1 45
$s2
[1] 1 45
$s3
[1] 1 7 45
$s4
[1] 1 7 45 55
$s5
[1] 1 7 45 55
$s6
[1] 1 7 12 45 55
$s7
[1] 1 7 12 45 55
$s8
[1] 1 7 12 45 55
$s9
[1] 1 7 12 45 55
$s10
[1] 1 7 12 17 42 45 55
$s11
[1] 1 7 12 14 17 42 45 55 59
$s12
[1] 1 7 12 14 17 42 45 55 59 74 91
$s13
[1] 1 7 12 14 17 42 45 55 59 74 91 100
$s14
[1] 1 7 10 12 14 17 42 45 55 59 74 91 100
$s15
[1] 1 2 7 10 12 14 17 28 42 45 55 59 74 91 100
$s16
[1] 1 2 7 10 12 14 17 28 42 45 55 59 74 91 100
$s17
[1] 1 2 7 10 12 14 17 28 42 45 55 59 71 74 91 100
$s18
[1] 1 2 7 10 12 14 17 28 42 45 55 59 71 74 91 98 100
$s19
[1] 1 2 7 10 12 14 17 28 42 45 55 59 71 74 91 96 98 100
$s20
[1] 1 2 7 10 12 14 17 26 28 42 45 55 56 59 71 74 91 96 98
[20] 100
$s21
[1] 1 2 7 10 12 14 17 26 28 42 45 55 56 59 71 74 91 96 98
[20] 100
$s22
[1] 1 2 5 7 10 12 14 17 26 28 42 45 55 56 59 71 74 91 96
[20] 98 100
$s23
[1] 1 2 5 7 10 12 14 17 26 28 30 42 44 45 55 56 59 71 74
[20] 84 91 96 98 100
$s24
[1] 1 2 5 7 10 12 14 17 26 28 30 31 42 44 45 55 56 59 71
[20] 74 77 84 91 96 98 100
$s25
[1] 1 2 5 7 10 12 14 17 26 28 30 31 42 44 45 55 56 59 71
[20] 74 77 84 91 96 98 100
$s26
[1] 1 2 5 7 10 12 14 17 23 26 28 30 31 42 44 45 55 56 59
[20] 71 74 77 84 91 96 98 100
$s27
[1] 1 2 5 7 10 12 14 17 23 26 28 30 31 39 42 44 45 55 56
[20] 59 71 74 77 84 88 91 96 98 100
$s28
[1] 1 2 5 7 10 12 14 17 23 26 28 30 31 39 42 44 45 55 56
[20] 59 71 74 77 84 88 91 96 98 100
$s29
[1] 1 2 5 7 10 12 14 17 23 26 28 30 31 39 42 44 45 55 56
[20] 59 71 74 75 77 84 88 91 96 98 100
$s30
[1] 1 2 5 7 10 12 14 17 23 26 28 30 31 39 42 44 45 55 56
[20] 59 71 74 75 77 84 88 91 96 98 100
$s31
[1] 1 2 5 7 10 12 14 17 23 26 28 30 31 39 42 44 45 55 56
[20] 59 63 71 74 75 77 84 88 91 96 98 100
$s32
[1] 1 2 5 7 10 12 14 23 26 28 30 31 39 42 44 45 55 56 59
[20] 63 71 74 75 77 84 88 91 96 98 100
$s33
[1] 1 2 5 7 10 11 12 14 23 26 28 30 31 39 42 44 45 55 56
[20] 59 63 71 74 75 77 84 88 91 96 98 100
$s34
[1] 1 2 3 5 7 10 11 12 14 23 26 28 30 31 39 40 42 44 45
[20] 48 55 56 59 63 71 74 75 77 84 88 91 96 98 100
$s35
[1] 1 2 3 5 7 10 11 12 14 23 26 28 30 31 39 40 42 44 45
[20] 48 55 56 59 63 71 74 75 77 84 88 91 96 98 100
$s36
[1] 1 2 3 5 7 10 11 12 14 23 26 28 30 31 39 40 42 44 45
[20] 48 55 56 59 63 71 74 75 77 84 88 91 96 98 100
$s37
[1] 1 2 3 5 7 10 11 12 14 23 26 28 30 31 39 40 42 44 45
[20] 48 55 56 59 63 71 74 75 77 84 88 91 96 98 100
$s38
[1] 1 2 3 5 7 8 10 11 12 14 16 23 26 28 30 31 39 40 42
[20] 44 45 48 49 55 56 59 62 63 65 71 74 75 77 84 88 91 96 98
[39] 100
$s39
[1] 1 2 3 5 7 8 10 11 12 14 16 23 26 28 30 31 39 40 42
[20] 44 45 48 49 55 56 59 62 63 64 65 71 74 75 77 84 88 91 96
[39] 98 100
$s40
[1] 1 2 3 5 7 8 10 11 12 14 16 23 26 28 31 39 40 42 44
[20] 45 48 49 55 56 59 62 63 64 65 71 74 75 77 84 88 91 96 98
[39] 100
$s41
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 39 40
[20] 42 44 45 48 49 55 56 59 62 63 64 65 71 74 75 77 84 88 96
[39] 98 100
$s42
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 39 40
[20] 42 44 45 48 49 55 56 59 62 63 64 65 71 74 75 77 84 88 96
[39] 98 100
$s43
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 37 39
[20] 40 42 44 45 46 48 49 55 56 58 59 62 63 64 65 71 72 74 75
[39] 77 84 88 96 98 100
$s44
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 37 39
[20] 40 42 44 45 46 48 49 55 56 58 59 62 63 64 65 71 72 74 75
[39] 77 84 88 96 98 100
$s45
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 36 37
[20] 39 40 42 44 45 46 48 49 55 56 58 59 62 63 64 65 70 71 72
[39] 74 75 77 84 86 88 96 98 100
$s46
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 34 36
[20] 37 39 40 41 42 44 45 46 48 49 55 56 58 59 62 63 64 65 70
[39] 71 72 74 75 77 84 86 88 96 98 100
$s47
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 34 36
[20] 37 39 40 41 42 44 45 46 48 49 55 56 58 59 62 63 64 65 70
[39] 71 72 73 74 75 77 84 86 88 96 98 100
$s48
[1] 1 2 3 5 7 8 10 11 12 14 16 17 23 26 28 31 32 34 36
[20] 37 39 40 41 42 44 45 46 47 48 49 55 56 58 59 62 63 64 65
[39] 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s49
[1] 1 2 3 5 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34
[20] 36 37 39 40 41 42 44 45 46 47 48 49 55 56 58 59 62 63 64
[39] 65 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s50
[1] 1 2 3 5 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34
[20] 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59 62 63
[39] 64 65 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s51
[1] 1 2 3 5 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34
[20] 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59 62 63
[39] 64 65 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s52
[1] 1 2 3 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34 36
[20] 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59 62 63 64
[39] 65 66 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s53
[1] 1 2 3 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34 36
[20] 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59 62 63 64
[39] 65 66 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s54
[1] 1 2 3 5 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34
[20] 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59 62 63
[39] 64 65 66 70 71 72 73 74 75 77 83 84 86 88 96 98 100
$s55
[1] 1 2 3 5 7 8 10 11 12 14 16 17 18 23 26 28 31 32 34
[20] 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59 62 63
[39] 64 65 66 70 71 72 73 74 75 77 83 84 86 88 95 96 98 100
$s56
[1] 1 2 3 5 7 8 10 11 12 14 15 16 17 18 23 26 27 28 31
[20] 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59
[39] 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 88 95 96 98
[58] 100
$s57
[1] 1 2 3 5 7 8 10 11 12 14 15 16 17 18 23 26 27 28 31
[20] 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59
[39] 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 88 93 95 96
[58] 98 100
$s58
[1] 1 2 3 5 7 8 10 11 12 14 15 16 17 18 23 26 27 28 31
[20] 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58 59
[39] 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93 95
[58] 96 98 100
$s59
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s60
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s61
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s62
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s63
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s64
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s65
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 93
[58] 95 96 98 100
$s66
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 90
[58] 93 95 96 98 100
$s67
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 90
[58] 93 95 96 98 100
$s68
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 90
[58] 93 95 96 98 100
$s69
[1] 1 2 3 5 7 8 9 10 11 12 14 15 16 17 18 23 26 27 28
[20] 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55 56 58
[39] 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87 88 90
[58] 93 95 96 98 100
$s70
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55
[39] 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87
[58] 88 90 93 95 96 98 100
$s71
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55
[39] 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87
[58] 88 90 93 95 96 98 100
$s72
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55
[39] 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87
[58] 88 90 93 95 96 98 100
$s73
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55
[39] 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87
[58] 88 90 93 95 96 98 100
$s74
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 54 55
[39] 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86 87
[58] 88 90 93 94 95 96 98 100
$s75
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s76
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s77
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s78
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s79
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s80
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s81
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s82
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s83
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 98 100
$s84
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s85
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s86
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s87
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s88
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s89
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s90
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s91
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s92
[1] 1 2 3 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26 27
[20] 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52 54
[39] 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84 86
[58] 87 88 90 93 94 95 96 97 98 100
$s93
[1] 1 2 3 4 5 6 7 8 9 10 11 12 14 15 16 17 18 23 26
[20] 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49 52
[39] 54 55 56 58 59 62 63 64 65 66 70 71 72 73 74 75 77 83 84
[58] 86 87 88 90 93 94 95 96 97 98 100
$s94
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 23
[20] 26 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49
[39] 52 54 55 56 58 59 62 63 64 65 66 67 70 71 72 73 74 75 77
[58] 83 84 86 87 88 90 93 94 95 96 97 98 100
$s95
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 23
[20] 26 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49
[39] 52 54 55 56 58 59 60 62 63 64 65 66 67 70 71 72 73 74 75
[58] 77 83 84 86 87 88 90 93 94 95 96 97 98 100
$s96
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 23
[20] 26 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49
[39] 52 54 55 56 58 59 60 62 63 64 65 66 67 70 71 72 73 74 75
[58] 77 83 84 86 87 88 90 92 93 94 95 96 97 98 100
$s97
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 23
[20] 26 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49
[39] 52 54 55 56 58 59 60 62 63 64 65 66 67 70 71 72 73 74 75
[58] 77 83 84 86 87 88 90 92 93 94 95 96 97 98 100
$s98
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 23
[20] 26 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49
[39] 52 54 55 56 58 59 60 62 63 64 65 66 67 70 71 72 73 74 75
[58] 77 83 84 86 87 88 90 92 93 94 95 96 97 98 100
$s99
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 23
[20] 26 27 28 29 31 32 34 36 37 39 40 41 42 44 45 46 47 48 49
[39] 52 54 55 56 58 59 60 62 63 64 65 66 67 70 71 72 73 74 75
[58] 77 83 84 86 87 88 90 92 93 94 95 96 97 98 100
s0 s1 s2 s3 s4 s5 s6 s7
[1,] 1 1.0071772 1.0138062 1.0162776 1.0137948 1.0173613 1.0284648 1.0411724
[2,] 1 1.0085466 1.0164244 1.0204196 1.0193087 1.0137390 0.9981481 0.9779583
[3,] 1 1.0021434 1.0049781 1.0061824 1.0059111 1.0201654 1.0352270 1.0481136
[4,] 1 0.9927692 0.9868190 0.9789941 0.9682762 0.9565943 0.9590135 0.9669902
[5,] 1 0.9853182 0.9702807 0.9560901 0.9425730 0.9277099 0.9145780 0.9027746
s8 s9 s10 s11 s12 s13 s14
[1,] 1.0534816 1.0654043 1.0769933 1.0712620 1.0553290 1.0425237 1.0413036
[2,] 0.9580681 0.9382723 0.9252344 0.9381715 0.9984776 1.0641310 1.1652444
[3,] 1.0604097 1.0721500 1.0834289 1.1033644 1.1546791 1.2108461 1.2483411
[4,] 0.9752592 0.9839825 0.9887672 1.0015633 1.0156773 1.0203529 1.0132680
[5,] 0.8915637 0.8809188 0.8729853 0.8719713 0.8553752 0.8367685 0.8245973
s15 s16 s17 s18 s19 s20 s21
[1,] 1.0430105 1.0468994 1.0514665 1.0570118 1.0530885 1.0415897 1.0237355
[2,] 1.2869694 1.4172269 1.5534375 1.7125283 1.8903265 2.0911139 2.3335691
[3,] 1.2757243 1.2976107 1.3186105 1.3512619 1.3805044 1.4081640 1.4347045
[4,] 0.9912623 0.9665460 0.9435596 0.9267030 0.9257300 0.9304902 0.9368666
[5,] 0.8312562 0.8436137 0.8575535 0.8728257 0.8986487 0.9277569 0.9555024
s22 s23 s24 s25 s26 s27 s28
[1,] 1.0057138 0.9897721 0.9768041 0.9632742 0.9476442 0.9351763 0.9201755
[2,] 2.5965085 2.8537132 3.1105810 3.3094320 3.5135419 3.7108843 3.9191244
[3,] 1.4594993 1.4800571 1.4910696 1.4813094 1.4776406 1.4729988 1.4668186
[4,] 0.9455815 0.9597916 0.9750166 0.9788509 0.9865537 0.9964370 1.0101404
[5,] 0.9863244 1.0324144 1.0907815 1.1739355 1.2547970 1.3381513 1.4326555
s29 s30 s31 s32 s33 s34 s35
[1,] 0.9074936 0.899085 0.8917094 0.8846055 0.8773223 0.8687813 0.8577652
[2,] 4.1404792 4.380314 4.6364035 4.9380891 5.2665345 5.6192554 6.0077547
[3,] 1.4598807 1.451292 1.4428824 1.4340623 1.4262489 1.4151032 1.4012636
[4,] 1.0249997 1.042008 1.0604707 1.0828850 1.1047651 1.1255828 1.1448226
[5,] 1.5325145 1.637764 1.7476527 1.8637741 1.9829067 2.1111324 2.2465367
s36 s37 s38 s39 s40 s41 s42
[1,] 0.845879 0.8336675 0.811240 0.7860199 0.7587272 0.7382511 0.7150757
[2,] 6.420698 6.8627513 7.329208 7.8254334 8.3509655 8.9293079 9.5832844
[3,] 1.386944 1.3721296 1.350616 1.3313857 1.3145559 1.2972948 1.2813333
[4,] 1.162490 1.1796399 1.185780 1.1880219 1.1907073 1.1859297 1.1808304
[5,] 2.386261 2.5313735 2.705967 2.8834970 3.0646730 3.2456715 3.4388437
s43 s44 s45 s46 s47 s48
[1,] 0.6913376 0.6668397 0.6445475 0.6254662 0.6088654 0.5903371
[2,] 10.3353832 11.2202376 12.2310684 13.3394554 14.5730052 15.9608756
[3,] 1.2647001 1.2428123 1.2231922 1.2026214 1.1795170 1.1549473
[4,] 1.1775438 1.1768188 1.1750288 1.1705966 1.1644943 1.1574295
[5,] 3.6471549 3.8897105 4.1792877 4.5107873 4.8616234 5.2390083
s49 s50 s51 s52 s53 s54
[1,] 0.5725764 0.5568251 0.5424775 0.5278639 0.5136136 0.5002052
[2,] 17.5431137 19.2967314 21.2668718 23.5378341 26.1344661 29.0436770
[3,] 1.1306378 1.1068736 1.0842438 1.0643020 1.0458155 1.0283727
[4,] 1.1494440 1.1421781 1.1355937 1.1303238 1.1261385 1.1228628
[5,] 5.6637566 6.1273519 6.6368583 7.2122682 7.8502625 8.5433615
s55 s56 s57 s58 s59 s60
[1,] 0.4873233 0.4747073 0.4619260 0.4492423 0.4362862 0.4230343
[2,] 32.3856437 36.2370356 40.6515923 45.7905940 51.5898715 58.2854278
[3,] 1.0116762 0.9958083 0.9812592 0.9663852 0.9497520 0.9323831
[4,] 1.1200121 1.1171885 1.1154107 1.1134865 1.1094742 1.1043158
[5,] 9.3215781 10.1941121 11.1433727 12.2065069 13.3592995 14.6432664
s61 s62 s63 s64 s65 s66
[1,] 0.4100071 0.3969547 0.3840540 0.3715819 0.3590370 0.3469326
[2,] 65.8458516 74.6166762 84.7491277 96.2583439 109.9283060 125.4535288
[3,] 0.9148438 0.8967537 0.8784169 0.8603333 0.8416226 0.8234090
[4,] 1.0984131 1.0918790 1.0847966 1.0773427 1.0693750 1.0609377
[5,] 16.0429895 17.6097918 19.3550114 21.2655287 23.4519440 25.8407487
s67 s68 s69 s70 s71 s72
[1,] 0.3342260 0.3213112 0.3086822 0.2966850 0.2851051 0.2736484
[2,] 143.7874794 165.5757301 190.8650351 220.4667122 254.6833526 295.8525928
[3,] 0.8047965 0.7855713 0.7664266 0.7471837 0.7282048 0.7088229
[4,] 1.0503082 1.0388797 1.0270599 1.0149957 1.0034619 0.9913761
[5,] 28.5264795 31.5916657 35.0033377 38.8260241 43.0570252 47.9358291
s73 s74 s75 s76 s77 s78
[1,] 0.2627666 0.2520880 0.2414813 0.2315972 0.2217161 0.2119663
[2,] 343.4943204 400.0580203 467.2883023 546.8295419 641.0629157 752.9680031
[3,] 0.6900239 0.6711793 0.6525446 0.6317762 0.6108553 0.5898130
[4,] 0.9792857 0.9669796 0.9536455 0.9364726 0.9182999 0.8993596
[5,] 53.3367800 59.4769880 66.4806430 74.3921129 83.3278842 93.4387796
s79 s80 s81 s82 s83
[1,] 0.2024139 0.1930996 0.1840502 0.1752834 0.1668156
[2,] 886.1530597 1045.0222701 1234.9618558 1462.5683874 1735.9306755
[3,] 0.5687615 0.5478019 0.5270186 0.5064810 0.4862375
[4,] 0.8798236 0.8598379 0.8395205 0.8189676 0.7982232
[5,] 104.8958878 117.9001248 132.6857724 149.5256742 168.7348468
s84 s85 s86 s87 s88
[1,] 0.1586188 0.1507118 0.1431037 0.1357928 0.1287757
[2,] 2064.9163959 2461.6280224 2941.1693541 3522.0999008 4227.3762013
[3,] 0.4663330 0.4467983 0.4276623 0.4089580 0.3907110
[4,] 0.7774582 0.7566549 0.7358290 0.7150322 0.6943090
[5,] 190.6841252 215.8127933 244.6098189 277.6633041 315.6607143
s89 s90 s91 s92 s93
[1,] 0.1220481 0.1156047 0.1094395 0.1034759 9.818831e-02
[2,] 5085.4473731 6131.6342232 7409.8674738 8996.2574250 1.092362e+04
[3,] 0.3729412 0.3556643 0.3388922 0.3224133 3.067248e-01
[4,] 0.6736988 0.6532371 0.6329560 0.6126148 5.931142e-01
[5,] 359.4074637 409.8485944 468.0944138 536.3519615 6.145877e+02
s94 s95 s96 s97 s98
[1,] 9.288784e-02 8.796320e-02 8.318506e-02 7.856019e-02 7.422258e-02
[2,] 1.333319e+04 1.626662e+04 1.989668e+04 2.446394e+04 3.006136e+04
[3,] 2.914472e-01 2.766870e-01 2.626468e-01 2.489802e-01 2.360771e-01
[4,] 5.737544e-01 5.544139e-01 5.356587e-01 5.170443e-01 4.991134e-01
[5,] 7.067690e+02 8.118347e+02 9.347554e+02 1.080368e+03 1.248192e+03
s99
[1,] 7.004751e-02
[2,] 3.713265e+04
[3,] 2.235271e-01
[4,] 4.813397e-01
[5,] 1.447501e+03
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