fat2Lpoly: Two-Locus Family-Based Association Test with Polytomic Outcome

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Performs family-based association tests with a polytomous outcome under 2-locus and 1-locus models defined by some design matrix.

Author
Alexandre BUREAU <alexandre.bureau@msp.ulaval.ca> and Jordie Croteau <jordie.croteau@crulrg.ulaval.ca>
Date of publication
2015-10-21 10:01:51
Maintainer
Alexandre BUREAU <alexandre.bureau@msp.ulaval.ca>
License
GPL
Version
1.2.2
URLs

View on CRAN

Man pages

design.1locus
Setting-up design matrices for a polytomous model with a...
design.dichotomous
Setting-up the design matrix for a logistic model with two...
design.endo2disease
Setting-up design matrices for the endophenotype-to-disease...
design.full
Setting-up design matrices for a full polytomous model with...
fat2Lpoly
Two-locus Family-based Association Test with Polytomous...
fat2Lpoly.allSNPs
Example results output by the function 'fat2Lpoly.withinR'
fat2Lpoly-internal
Internal fat2Lpoly Functions
fat2Lpoly-package
Two-locus Family-based Association Test with Polytomous...
fat2Lpoly.withinR
Two-locus Family-based Association Test with Polytomous...
get.scores.pvalues
function to compute scores and p-values
ped.x.all
Example dataset returned by the function 'read.merlin.files'
read.merlin.files
function to read input files in Merlin format

Files in this package

fat2Lpoly
fat2Lpoly/inst
fat2Lpoly/inst/extdata
fat2Lpoly/inst/extdata/loc1.freq
fat2Lpoly/inst/extdata/loc1.ibd
fat2Lpoly/inst/extdata/loc1.dat
fat2Lpoly/inst/extdata/loc2.ibd
fat2Lpoly/inst/extdata/loc2.dat
fat2Lpoly/inst/extdata/loc2.ped
fat2Lpoly/inst/extdata/loc1.ped
fat2Lpoly/inst/extdata/loc2.freq
fat2Lpoly/NAMESPACE
fat2Lpoly/data
fat2Lpoly/data/ped.x.all.rda
fat2Lpoly/data/fat2Lpoly.allSNPs.rda
fat2Lpoly/R
fat2Lpoly/R/converti.terme.R
fat2Lpoly/R/design.1locus.R
fat2Lpoly/R/cov.score.poly.R
fat2Lpoly/R/design.full.R
fat2Lpoly/R/get.scores.pvalues.R
fat2Lpoly/R/produits.paires.R
fat2Lpoly/R/design.dichotomique.R
fat2Lpoly/R/scores.covs.R
fat2Lpoly/R/read.merlin.files.R
fat2Lpoly/R/fat2Lpoly.withinR.R
fat2Lpoly/R/design.polytomous.R
fat2Lpoly/R/alleles2sums.R
fat2Lpoly/R/ibd.terms.w.r
fat2Lpoly/R/cov.score.interfunction.R
fat2Lpoly/R/design.endo2disease.R
fat2Lpoly/R/score.poly.w.r
fat2Lpoly/R/calcule.poids.Chen.R
fat2Lpoly/R/ibd.terms.R
fat2Lpoly/R/fat2Lpoly.R
fat2Lpoly/R/calcule.poids.alphafixe.r
fat2Lpoly/R/score.poly.R
fat2Lpoly/MD5
fat2Lpoly/DESCRIPTION
fat2Lpoly/man
fat2Lpoly/man/fat2Lpoly-package.Rd
fat2Lpoly/man/ped.x.all.Rd
fat2Lpoly/man/fat2Lpoly.withinR.Rd
fat2Lpoly/man/fat2Lpoly.allSNPs.Rd
fat2Lpoly/man/design.1locus.Rd
fat2Lpoly/man/design.endo2disease.Rd
fat2Lpoly/man/read.merlin.files.Rd
fat2Lpoly/man/design.dichotomous.Rd
fat2Lpoly/man/get.scores.pvalues.Rd
fat2Lpoly/man/fat2Lpoly-internal.Rd
fat2Lpoly/man/design.full.Rd
fat2Lpoly/man/fat2Lpoly.Rd