flexrsurv: Flexible Relative Survival

Perform relative survival analyses using approaches described in Remontet et al. (2007) <DOI:10.1002/sim.2656> and Mahboubi et al. (2011) <DOI:10.1002/sim.4208>. It implements non-linear, non-proportional effects and both non proportional and non linear effects using splines (B-spline and truncated power basis).

Install the latest version of this package by entering the following in R:
install.packages("flexrsurv")
AuthorIsabelle Clerc-Urms [aut], Michel Grzebyk [aut, cre], Guy Hdelin [ctb], CENSUR working survival group [ctb]
Date of publication2016-04-26 19:32:05
MaintainerMichel Grzebyk <michel.grzebyk@inrs.fr>
LicenseGPL (>= 2.0)
Version1.3.3

View on CRAN

Functions

flexrsurv Man page
Flexrsurv Man page
flexrsurv -internal.Rd Man page
flexrsurv.ll Man page
flexrsurvpackage Man page
flexrsurv-package Man page
Flexrsurvpackage Man page
Flexrsurv-package Man page
getDegree,.SplineBasis-method Man page
getKnots,.SplineBasis-method Man page
getLog,.SplineBasis-method Man page
getNBases,.SplineBasis-method Man page
getOrder,.SplineBasis-method Man page
--methods Man page
*-methods Man page
+-methods Man page
-,MSplineBasis,MSplineBasis-method Man page
+,MSplineBasis,MSplineBasis-method Man page
-,MSplineBasis,numeric-method Man page
*,MSplineBasis,numeric-method Man page
+,MSplineBasis,numeric-method Man page
NLL Man page
NLLbeta Man page
NPH Man page
NPHalpha Man page
NPHNLL Man page
-,numeric,MSplineBasis-method Man page
*,numeric,MSplineBasis-method Man page
+,numeric,MSplineBasis-method Man page
-,numeric,SplineBasis-method Man page
*,numeric,SplineBasis-method Man page
+,numeric,SplineBasis-method Man page
-,numeric,TPSplineBasis-method Man page
*,numeric,TPSplineBasis-method Man page
+,numeric,TPSplineBasis-method Man page
print.flexrsurv Man page
print.summary.flexrsurv Man page
.SplineBasis-class Man page
-,SplineBasis,numeric-method Man page
*,SplineBasis,numeric-method Man page
+,SplineBasis,numeric-method Man page
-,SplineBasis,SplineBasis-method Man page
+,SplineBasis,SplineBasis-method Man page
summary.flexrsurv Man page
-,TPSplineBasis,numeric-method Man page
*,TPSplineBasis,numeric-method Man page
+,TPSplineBasis,numeric-method Man page
+,TPSplineBasis,TPSplineBasis-method Man page

Files

src
src/EvaluateSplineBasis.c
src/EvaluateTPSplineBasis.c
src/flexrsurv.h
src/EvaluateCLTPSplineBasis.c
src/PredictTPSplineBasis.c
src/WeightedCumulativeExposure.c
src/PredictSplineBasis.c
src/EvaluateCLSplineBasis.c
NAMESPACE
R
R/default_bands.R R/ll_flexrsurv_beta0beta.R R/summary.flexrsurv.R R/ll_flexrsurv_fromto_GA0B0AB_bh.R R/split_data.R R/StepParam.R R/gr_ll_flexrsurv_GA0B0AB.R R/make.formulastep.formula.R R/intweights.R R/gr_ll_flexrsurv_GA0B0AB_bh.R R/flexrsurv.ll.fit.R R/variable2term.R R/flexrsurv.glmiterative.fit.R R/make.shortnames.coefficients.R R/get_list_var.R R/ll_flexrsurv_fromto_alpha0alpha_bh.R R/onAttach.R R/gr_ll_flexrsurv_fromto_GA0B0AB.R R/ReadDesignFlexrsurv.R R/matrix.util.R R/ll_flexrsurv_fromto_gamma0_bh.R R/ll_flexrsurv_GA0B0AB_bh.R R/AllClass.R R/make.control.flexrsurv.R R/ll_flexrsurv_fromto_beta0beta.R R/make.mle.formula.R R/opg_flexrsurv_G0A0B0AB_bh.R R/ll_flexrsurv_beta0beta_bh.R R/get_Splinebasis.R R/ll_flexrsurv_alpha0alpha_bh.R R/fix.flexrsurv.formula.R R/ll_flexrsurv_fromto_alpha0alpha.R R/rateTD.R R/Flexrsurv.R R/opg_flexrsurv_fromto_G0A0B0AB.R R/rate_NPHNLL.R R/keep.terms.R R/intTD_base_base.R R/opg_flexrsurv_fromto_G0A0B0AB_bh.R R/ll_flexrsurv_fromto_gamma0.R R/nl.td.func.R R/SplineParam.R R/intTD.R R/converged.R R/design.R R/NLL.NPH.func.R R/ll_flexrsurv_GA0B0AB.R R/computeLinearPredictor.R R/flexrsurv.ll.R R/flexrsurv.ll.fromto.fit.R R/ll_flexrsurv_fromto_GA0B0AB.R R/print.flexrsurv.R R/print.summary.flexrsurv.R R/rateTD_bh.R R/DesignMatrix.R R/computeCumulativeHazard.R R/make.glm.formula.R R/gr_ll_flexrsurv_fromto_GA0B0AB_bh.R R/cutT.R R/ll_flexrsurv_gamma0.R R/flexrsurv.glm.fit.R R/intTD_base.R R/intTDfromto_base.R R/ll_flexrsurv_fromto_beta0beta_bh.R R/opg_flexrsurv_G0A0B0AB.R R/computeStdErrorLinearPredictor.R R/intTDfromto.R R/ll_flexrsurv_gamma0_bh.R R/WhichBand.R R/get_NPHNLL_vars.R R/ExpandCoefBasis.R R/zzz.R R/ll_flexrsurv_alpha0alpha.R R/make.formulastep.terms.R
MD5
build
build/partial.rdb
DESCRIPTION
man
man/Flexrsurv.Rd man/flexrsurv-internal.Rd man/Flexrsurvpackage.Rd man/NLL.Rd man/summary.flexrsurv.Rd man/print.flexrsurv.Rd man/NPH.Rd man/NPHNLL.Rd man/NLLbetaNPHalpha.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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