flexrsurv
Flexible Relative Survival Analysis

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Functions
473
Source code
128
Man pages
18
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flexrsurv: Flexible Relative Survival Analysis
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API for flexrsurv
Flexible Relative Survival Analysis

Global functions
%*%,BSplineBasis,matrix-method Man page
%*%,LEBSplineBasis,matrix-method Man page
%*%,SplineBasis,matrix-method Man page
%*%,matrix,BSplineBasis-method Man page
%*%,matrix,LEBSplineBasis-method Man page
%*%,matrix,SplineBasis-method Man page
*,BDSplineBasis,numeric-method Man page
*,BSplineBasis,numeric-method Man page
*,LEBSplineBasis,numeric-method Man page
*,LEMSplineBasis,numeric-method Man page
*,MDSplineBasis,numeric-method Man page
*,MSplineBasis,numeric-method Man page
*,SplineBasis,numeric-method Man page
*,TPSplineBasis,numeric-method Man page
*,numeric,BDSplineBasis-method Man page
*,numeric,BSplineBasis-method Man page
*,numeric,LEBSplineBasis-method Man page
*,numeric,LEMSplineBasis-method Man page
*,numeric,MDSplineBasis-method Man page
*,numeric,MSplineBasis-method Man page
*,numeric,SplineBasis-method Man page
*,numeric,TPSplineBasis-method Man page
*-methods Man page
+,BDSplineBasis,BDSplineBasis-method Man page
+,BDSplineBasis,numeric-method Man page
+,BSplineBasis,BSplineBasis-method Man page
+,BSplineBasis,numeric-method Man page
+,LEBSplineBasis,LEBSplineBasis-method Man page
+,LEBSplineBasis,numeric-method Man page
+,LEMSplineBasis,LEMSplineBasis-method Man page
+,LEMSplineBasis,numeric-method Man page
+,MDSplineBasis,MDSplineBasis-method Man page
+,MDSplineBasis,numeric-method Man page
+,MSplineBasis,MSplineBasis-method Man page
+,MSplineBasis,numeric-method Man page
+,SplineBasis,SplineBasis-method Man page
+,SplineBasis,numeric-method Man page
+,TPSplineBasis,TPSplineBasis-method Man page
+,TPSplineBasis,numeric-method Man page
+,numeric,BDSplineBasis-method Man page
+,numeric,BSplineBasis-method Man page
+,numeric,LEBSplineBasis-method Man page
+,numeric,LEMSplineBasis-method Man page
+,numeric,MDSplineBasis-method Man page
+,numeric,MSplineBasis-method Man page
+,numeric,SplineBasis-method Man page
+,numeric,TPSplineBasis-method Man page
+-methods Man page
-,BDSplineBasis,BDSplineBasis-method Man page
-,BDSplineBasis,numeric-method Man page
-,BSplineBasis,BSplineBasis-method Man page
-,BSplineBasis,numeric-method Man page
-,LEBSplineBasis,LEBSplineBasis-method Man page
-,LEBSplineBasis,numeric-method Man page
-,LEMSplineBasis,LEMSplineBasis-method Man page
-,LEMSplineBasis,numeric-method Man page
-,MDSplineBasis,MDSplineBasis-method Man page
-,MDSplineBasis,numeric-method Man page
-,MSplineBasis,MSplineBasis-method Man page
-,MSplineBasis,numeric-method Man page
-,SplineBasis,SplineBasis-method Man page
-,SplineBasis,numeric-method Man page
-,TPSplineBasis,numeric-method Man page
-,numeric,BDSplineBasis-method Man page
-,numeric,BSplineBasis-method Man page
-,numeric,LEBSplineBasis-method Man page
-,numeric,LEMSplineBasis-method Man page
-,numeric,MDSplineBasis-method Man page
-,numeric,MSplineBasis-method Man page
-,numeric,SplineBasis-method Man page
-,numeric,TPSplineBasis-method Man page
--methods Man page
.SplineBasis-class Man page
.computeCumulativeHazard_GA0B0AB Source code
.computeCumulativeHazard_GA0B0AB_bh Source code
.computeCumulativeHazard_fromto_1wceadd Source code
.computeCumulativeHazard_fromto_GA0B0AB Source code
.computeCumulativeHazard_fromto_GA0B0ABE0 Source code
.computeCumulativeHazard_fromto_GA0B0AB_bh Source code
.computeLinearPredictor_GA0B0AB Source code
.computeLinearPredictor_GA0B0ABE0 Source code
.computeLinearPredictor_fromto_1wceadd Source code
.computeStdErrorCumulativeHazard_GA0B0AB Source code
.computeStdErrorCumulativeHazard_GA0B0AB_bh Source code
.computeStdErrorLinearPredictor_GA0B0AB Source code
.computeStdErrorLinearPredictor_GA0B0ABE0 Source code
.onAttach Source code Source code
.onLoad Source code
.onUnload Source code
BSplineBasis Source code
BSplineBasis0 Source code
BSplineBasis2 Source code Source code
C0BSplineBasis Source code
C0TPSplineBasis Source code
ConstraintSplineNonDecreassing.BSplineBasis Source code
DesignMatrixNPHNLL Source code
Dif.LEMS.LEMS Source code
Dif.LEMS.n Source code
Dif.MS.MS Source code
Dif.MS.n Source code
Dif.S.S Source code
Dif.S.n Source code
Dif.TPS.TPS Source code
Dif.TPS.n Source code
Dif.n.LEMS Source code
Dif.n.MS Source code
Dif.n.S Source code
Dif.n.TPS Source code
EBSplineBasis Source code
EMSplineBasis Source code
EvaluateBBasis Source code
EvaluateBBasis0 Source code
EvaluateC0SBasis Source code
EvaluateEBBasis Source code
EvaluateLCBBasis Source code
EvaluateLCLEBBasis Source code
EvaluateLCTPBasis Source code
EvaluateLEBBasis Source code
EvaluateTPBasis Source code
EvaluateTPBasisPos Source code
ExpandAllCoefBasis Source code
ExpandCoefBasis Source code
ExpandMCoefSBasis0 Source code
ExpandVCoefSBasis0 Source code
FEvaluateBBasis Source code
FEvaluateEBBasis Source code
FEvaluateLEBBasis Source code
FEvaluateTPBasis Source code
FEvaluateTPBasisOld Source code
FEvaluateTPBasisPos Source code
FEvaluateTPBasisPosOld Source code
FEvaluateTPBasisstd Source code
FIntegrateTPBasis Source code
FIntegrateTPBasis0 Source code
Flexrsurv Man page
Flexrsurv-package Man page
Flexrsurvclt Man page
Flexrsurvpackage Man page
GLMStepParam Source code
GradientWCEEMBasis Source code
GradientWCEMBasis Source code
GradientWCETPBasis Source code
InitCoefBBasis Source code
InitCoefCSBasis Source code
InitCoefCTPBasis Source code
InitCoefSBasis Source code
InitCoefTPBasis Source code
IntegrateBBasis Source code
IntegrateBBasisOld Source code
IntegrateEBBasis Source code
IntegrateLEBBasis Source code
LEBSplineBasis Source code
LEBSplineBasis0 Source code
LEBSplineBasis2 Source code
LTBSplineBasis Source code
MSplineBasis Man page Source code
MSplineBasis-class Man page
MarsdenIdentity Source code
NCAdaptedStepParam Source code
NCStepParam Source code
NLL Man page Source code
NLLbeta Man page Source code
NPH Man page Source code
NPHNLL Man page Source code
NPHNLL2NLL.formula Source code
NPHNLL2NLL.terms Source code
NPHNLL2NPH.terms Source code
NPHNLL2NPHalpha.formula Source code
NPHNLL2Spline.terms Source code
NPHalpha Man page Source code
PivotConstraintSplinceCLT.R2bBSplineBasis Source code
PivotConstraintSplinceMonotoneSturm.BSplineBasis Source code
PredictBBasisBeta Source code
PredictCumWCE Source code
PredictEBBasisBeta Source code
PredictLEBBasisBeta Source code
PredictTPBasisBeta Source code
PredictWCEEMBasis Source code
PredictWCEMBasis Source code
PredictWCETPBasis Source code
Prod.LEMS.m Source code
Prod.LEMS.n Source code
Prod.MS.m Source code
Prod.MS.n Source code
Prod.S.m Source code
Prod.S.n Source code
Prod.TPS.n Source code
Prod.m.LEMS Source code
Prod.m.MS Source code
Prod.m.S Source code
Prod.n.LEMS Source code
Prod.n.MS Source code
Prod.n.S Source code
Prod.n.TPS Source code
R2bBSplineBasis Source code
ReadDesignFlexrsurv Source code
ReadDesignFlexrsurvWCEI Source code
StackDiag Source code
Sum.LEMS.LEMS Source code
Sum.LEMS.n Source code
Sum.MS.MS Source code
Sum.MS.n Source code
Sum.S.S Source code
Sum.S.n Source code
Sum.TPS.TPS Source code
Sum.TPS.n Source code
Sum.n.LEMS Source code
Sum.n.MS Source code
Sum.n.S Source code
Sum.n.TPS Source code
SumDirect Source code
TPRSplineBasis Source code
TPSplineBasis Source code
WCEI Man page Source code
all_specials_vars.terms Source code
aperm.ratetable Source code
converged Source code
cutT Source code
cutTfromto Source code
default_bands_BS Source code
default_bands_MS Source code
default_bands_TPS Source code
deriv.BSplineBasis Source code
deriv.EBSplineBasis Source code
deriv.LEBSplineBasis Source code
dim,BSplineBasis-method Man page
dim,EBSplineBasis-method Man page
dim.BSplineBasis Source code
duplicMat Source code
duplicSumDirect Source code
extract.ratetable Source code
fastintTD_base_GLM Source code
fastintTD_base_GLM0 Source code
fastintTD_base_base_GLM Source code
fastintTDft_WCEbase_GLM Source code
fastintTDft_base2_GLM Source code
fastintTDft_base_GLM Source code
fix.flexrsurv.formula Source code
flexrsurv Man page Source code
flexrsurv-internal.Rd Man page
flexrsurv-package Man page
flexrsurv.glm.fit Source code
flexrsurv.glmiterative.fit Source code
flexrsurv.ll Man page Source code
flexrsurv.ll.fromto.brass.wce.fit Man page
flexrsurv.ll.fromto.brass0.periode.wce.fitCoptim Man page
flexrsurv.ll.fromto.brass0.wce.fitCoptim Man page
flexrsurv.ll.fromto.brass0.wceadd.fitCoptim Man page
flexrsurvclt Man page Source code
flexrsurvclt.ll Man page Source code
flexrsurvpackage Man page
getBrassHazardFromTable Man page
getBrassPseudoHazardFromTable Man page Source code
getDegree,.SplineBasis-method Man page
getFirstId Source code
getHazardFromTable Man page Source code
getIndexId Source code
getKnots,.SplineBasis-method Man page
getLastId Source code
getLog,.SplineBasis-method Man page
getNBases,.SplineBasis-method Man page
getOrder,.SplineBasis-method Man page
getPseudoHazardFromTable Man page Source code
get_Splinebasis Source code
get_SplinebasisCLT Source code
get_TimeSplinebasis Source code
get_all_Xvars.formula Source code
get_all_specials_vars Source code
get_response_vars.formula Source code
gr_cumhaz_flexrsurv_GA0B0AB Source code
gr_cumhaz_flexrsurv_GA0B0AB_bh Source code
gr_cumhaz_flexrsurv_fromto_GA0B0AB Source code
gr_cumhaz_flexrsurv_fromto_GA0B0AB_bh Source code
gr_link_flexrsurv_GA0B0AB Source code
gr_link_flexrsurv_fromto_GA0B0AB Source code
gr_ll_flexrsurv_GA0B0AB Source code
gr_ll_flexrsurv_GA0B0AB_bh Source code
gr_ll_flexrsurv_fromto_1WCEaddBr0Control Source code
gr_ll_flexrsurv_fromto_1WCEaddBr0PeriodControl Source code
gr_ll_flexrsurv_fromto_GA0B0AB Source code
gr_ll_flexrsurv_fromto_GA0B0ABE0Br0Control Source code
gr_ll_flexrsurv_fromto_GA0B0ABE0Br0PeriodControl Source code
gr_ll_flexrsurv_fromto_GA0B0AB_bh Source code
gradientwce Man page
gradientwce, EMSplineBasis,numeric,numeric,numeric-method Man page
gradientwce, MDSplineBasis,numeric,numeric,numeric-method Man page
gradientwce, MSplineBasis,numeric,numeric,numeric-method Man page
gradientwce, TPSplineBasis,numeric,numeric,numeric-method Man page
intTD_BOOLE Source code
intTD_GL Source code
intTD_GLM Source code
intTD_NC Source code
intTD_NC_debug Source code
intTD_SIM3_8 Source code
intTD_base_GL Source code
intTD_base_GLM Source code
intTD_base_NC Source code
intTD_base_NC_debug Source code
intTD_base_base_GLM Source code
intTD_base_base_NC Source code
intTD_base_base_NC_debug Source code
intTD_integrate Source code
intTDft_BOOLE Source code
intTDft_GL Source code
intTDft_GLM Source code
intTDft_NC Source code
intTDft_NC0 Source code
intTDft_NC_debug Source code
intTDft_SIM3_8 Source code
intTDft_WCEbase_GL Source code
intTDft_WCEbase_NC Source code
intTDft_WCEbase_NC0 Source code
intTDft_base2_NC Source code
intTDft_base_GL Source code
intTDft_base_NC Source code
intTDft_base_NC0 Source code
intTDft_base_NC_debug Source code
integrate.BSplineBasis Source code
integrate.EBSplineBasis Source code
integrate.LEBSplineBasis Source code
integrate.MSplineBasis Source code
integrate.TPSplineBasis Source code
integrateTPBasis Source code
intweights_BOOLE Source code
intweights_BOOLEb Source code
intweights_CAV_SIM Source code
intweights_SIM_3_8 Source code
intweights_SIM_3_8b Source code
ll_flexrsurv_GA0B0AB Source code
ll_flexrsurv_GA0B0AB_bh Source code
ll_flexrsurv_alpha0alpha Source code
ll_flexrsurv_alpha0alpha_bh Source code
ll_flexrsurv_beta0beta Source code
ll_flexrsurv_beta0beta_bh Source code
ll_flexrsurv_fromto_1WCEaddBr0Control Source code
ll_flexrsurv_fromto_1WCEaddBr0PeriodControl Source code
ll_flexrsurv_fromto_GA0B0AB Source code
ll_flexrsurv_fromto_GA0B0ABE0Br0 Source code
ll_flexrsurv_fromto_GA0B0ABE0Br0Control Source code
ll_flexrsurv_fromto_GA0B0ABE0Br0PeriodControl Source code
ll_flexrsurv_fromto_GA0B0AB_bh Source code
ll_flexrsurv_fromto_alpha0alpha Source code
ll_flexrsurv_fromto_alpha0alpha_bh Source code
ll_flexrsurv_fromto_beta0beta Source code
ll_flexrsurv_fromto_beta0beta_bh Source code
ll_flexrsurv_fromto_gamma0 Source code
ll_flexrsurv_fromto_gamma0_bh Source code
ll_flexrsurv_gamma0 Source code
ll_flexrsurv_gamma0_bh Source code
logLik.flexrsurv Man page Source code
make.formulastepNLL.formula Source code
make.formulastepNLL.terms Source code
make.formulastepNPH.formula Source code
make.formulastepNPH.terms Source code
make.glm.formula Source code
make.mle.formula Source code
make.shortnames.coefficients Source code
maketpdegrees Source code Source code
ndf.flexrsurvclt Man page Source code
nl Source code
nlbeta Source code
nltd Source code
nobs.flexrsurv Man page Source code
nonLinconstrOptim Source code
oldBSplineBasis Source code
oldExpandAllCoefBasis Source code
opg_flexrsurv_G0A0B0AB Source code
opg_flexrsurv_G0A0B0AB_bh Source code
opg_flexrsurv_fromto_1WCEaddBr0Control Source code
opg_flexrsurv_fromto_1WCEaddBr0PeriodControl Source code
opg_flexrsurv_fromto_G0A0B0AB Source code
opg_flexrsurv_fromto_G0A0B0AB_bh Source code
opg_flexrsurv_fromto_GA0B0ABE0Br0Control Source code
opg_flexrsurv_fromto_GA0B0ABE0Br0PeriodControl Source code
predict.BSplineBasis Source code
predict.EBSplineBasis Source code
predict.LEBSplineBasis Source code
predict.TPSplineBasis Source code
predict.flexrsurv Man page Source code
predict.flexrsurvclt Man page Source code
predictCLT Man page Source code
predictCLT.default Man page Source code
predictCLT.flexrsurvclt Man page Source code
predictCumulativeHazard Source code
predictCumulativeHazard.flexrsurv Source code
predictHazard Source code Source code
predictHazard.flexrsurv Source code
predictHazard.flexrsurvWCE Source code
predictSpline Man page Source code
predictSpline,BDSplineBasis,numeric-method Man page
predictSpline,BSplineBasis,numeric-method Man page
predictSpline,EBSplineBasis,numeric-method Man page
predictSpline,LEBSplineBasis,numeric-method Man page
predictSpline,R2BSplineBasis,numeric-method Man page
predictSpline,R2bBSplineBasis,numeric-method Man page
predictSpline,TPSplineBasis,numeric-method Man page
predictSpline,character,numeric-method Man page
predictSpline.character Man page
predictSpline.default Man page Source code
predictwce Man page
predictwce, BDSplineBasis,numeric,numeric,numeric-method Man page
predictwce, BSplineBasis ,numeric,numeric,numeric-method Man page
predictwce, EMSplineBasis,numeric,numeric,numeric-method Man page
predictwce, MDSplineBasis,numeric,numeric,numeric-method Man page
predictwce, MSplineBasis ,numeric,numeric,numeric-method Man page
predictwce, TPSplineBasis,numeric,numeric,numeric-method Man page
print.flexrsurv Man page
print.summary.flexrsurv Man page Source code
rateTD Source code
rateTD_1addwce Source code
rateTD_alphabeta Source code
rateTD_alphabeta_1addwce Source code
rateTD_alphabetaeta0_bh Source code
rateTD_beta0alphabeta Source code
rateTD_bh Source code
rateTD_bh_alphabeta Source code
rateTD_bh_beta0alphabeta Source code
rateTD_eta0 Source code
rateTD_eta0_bh Source code
rateTD_gamma0 Source code
rateTD_gamma0_bh Source code
rateTD_gamma0_bh_eta0_bh Source code
rateTD_gamma0alphabeta Source code
rateTD_gamma0alphabetaeta0 Source code
rateTD_gamma0alphabetaeta0_bh Source code
rateTD_gamma0alphabetaeta0_bh_bh Source code
rateTD_gamma0eta0 Source code
rateTD_gamma0eta0_bh Source code
rate_NPHNLL Source code
ratioTD_bh Source code
ratioTD_bh_alphabeta Source code
ratioTD_bh_beta0alphabeta Source code
show.SplineBasis Source code
show.TPSplineBasis Source code
slowintTDft_WCEbase_NC Source code
slowpredict.BSplineBasis Source code
slowpredict.LEBSplineBasis Source code
split.data Source code
summary.flexrsurv Man page
td Source code
tdalpha Source code
variable2term Source code
weighted_cummulative_exposure Man page Source code
flexrsurv documentation built on June 7, 2023, 5:09 p.m.

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