MakeProfile.sn_nomemory: MakeProfile.sn_nomemory
In fst4pg: Genetic Distance Segmentation for Population Genetics
MakeProfile.sn_nomemory R Documentation
MakeProfile.sn_nomemory
Description
Perform segmentation on a given dataset and returns the segmented profile
Usage
MakeProfile.sn_nomemory(DF, Kmax, method = "biggest.S3IB", sd.y = NULL)
Arguments
DF
a data.frame with two columns, Fst and Weights, as provided by the HudsonFst.m function
Kmax
max number of changes used for model selection (check with crops)
method
a string, the name of the criterion used for model selection: (1) "givenVariance" = using the penalty of Lebarbier 2005 given a estimator of the variance, (2) "biggest.S3IB" = biggest=TRUE in saut taken from S3IB, (3) "notbiggest.S3IB"
To be chosen amongs3ib.jump, s3ib.nojump, pre, ddse (capushe) or jump (capushe)
sd.y
a numeric value corresponding to the (estimated) standard deviation of the signal. If NULL (default) the value is automatically estimated.
Value
a smoothed profile
fst4pg documentation built on July 4, 2022, 1:06 a.m.
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| MakeProfile.sn_nomemory | R Documentation |
MakeProfile.sn_nomemory
Description
Perform segmentation on a given dataset and returns the segmented profile
Usage
MakeProfile.sn_nomemory(DF, Kmax, method = "biggest.S3IB", sd.y = NULL)
Arguments
DF |
a data.frame with two columns, Fst and Weights, as provided by the |
Kmax |
max number of changes used for model selection (check with crops) |
method |
a string, the name of the criterion used for model selection: (1) "givenVariance" = using the penalty of Lebarbier 2005 given a estimator of the variance, (2) "biggest.S3IB" = biggest=TRUE in saut taken from S3IB, (3) "notbiggest.S3IB" To be chosen amongs3ib.jump, s3ib.nojump, pre, ddse (capushe) or jump (capushe) |
sd.y |
a numeric value corresponding to the (estimated) standard deviation of the signal. If NULL (default) the value is automatically estimated. |
Value
a smoothed profile
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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