ProfilingSummary: ProfilingSummary

In fst4pg: Genetic Distance Segmentation for Population Genetics

ProfilingSummary

Description

Summary of Fst profiles

Usage

ProfilingSummary(FstProfiles, SnpInfo)

Arguments

FstProfiles	a list of Fst profiles as obtained from function HudsonFst.prof
SnpInfo	a data.frame providing information about markers

Value

a list of data.frame. Each data.frame summarizes a Fst profile, in terms of number of segments, Start and End positions, length (i.e. number of markers) and Fst level of each segment.

Examples

data(Freq);data(NbGamete);data(Info)
FreqNbG <- BuildFreqNbG(Freq,NbGamete)
HFst.m <- HudsonFst.m(FreqNbG)
TwoPops <- list(First="Colombian",Second="Tuscan")
HFst.prof <- HudsonFst.prof(HFst.m,Contrast=TwoPops)
PS <- ProfilingSummary(HFst.prof,Info)

fst4pg documentation built on July 4, 2022, 1:06 a.m.