NEWS.md

In ftrCOOL: Feature Extraction from Biological Sequences

News

ftrCOOL 2.0.0

Added the following functions:

Amino Acid Functions

• AESNN3
• ASDC
• binary_3bit_T1
• binary_3bit_T2
• binary_3bit_T3
• binary_3bit_T4
• binary_3bit_T5
• binary_3bit_T6
• binary_3bit_T7
• binary_5bit_T1
• binary_5bit_T2
• binary_6bit
• DistancePair
• OPF_7bit_T1
• OPF_7bit_T2
• OPF_7bit_T3
• OPF_10bit

DNA/RNA Functions

• ASDC_DNA
• ASDC_RNA
• DPCP_DNA
• DPCP_RNA
• KNN_DNA
• KNN_RNA
• Mismatch_DNA
• Mismatch_RNA
• MMI_DNA
• MMI_RNA
• PS2_DNA
• PS2_RNA
• PS3_DNA
• PS3_RNA
• PS4_DNA
• PS4_RNA
• TPCP_DNA
• TPCP_RNA
• Zcurve9bit_DNA
• Zcurve9bit_RNA
• Zcurve12bit_DNA
• Zcurve12bit_RNA
• Zcurve36bit_DNA
• Zcurve36bit_RNA
• Zcurve48bit_DNA
• Zcurve48bit_RNA
• Zcurve144bit_DNA
• Zcurve144bit_RNA
• Zcurve9bit_DNA

Fixed a bug in 'upto' parameter of CkSNUCpair_DNA and CkSAApair

ftrCOOL 1.1.1

Fixed a bug in the example of function DisorderB

ftrCOOL 1.1.0

Fixed bugs in the following functions:

• AAutoCor()
• AutoCorDiNUC()
• AutoCorTriNUC()

Renamed the following functions:

• AutoCorDiNUC to AutoCorDiNUC_DNA
• AutoCorTriNUC to AutoCorTriNUC_DNA
• CkSNUCpair to CkSNUCpair_DNA
• CodonUsage to CodonUsage_DNA
• DiNUC2Binary to DiNUC2Binary_DNA
• DiNUCindex to DiNUCindex_DNA
• ENUComposition to ENUComposition_DNA
• ExpectedValKmerNUC to ExpectedValKmerNUC_DNA
• G_Ccontent to G_Ccontent_DNA
• kNUComposition to kNUComposition_DNA
• LocalPoSpKaaF to LocalPoSpKAAF
• LocalPoSpKnucF to LocalPoSpKNUCF_DNA
• maxORFlength to maxORFlength_DNA
• NUC2Binary to NUC2Binary_DNA
• NUCKpartComposition to NUCKpartComposition_DNA
• PSEkNUCdi to PSEkNUCdi_DNA
• PSEkNUCTri to PSEkNUCTri_DNA
• TriNucIndex to TriNucIndex_DNA

Added the following functions:

• ANF_RNA()
• ASA()
• APkNUCdi_RNA()
• AutoCorDiNUC_RNA()
• CkSNUCpair_RNA()
• CodonUsage_RNA()
• DiNUC2Binary_RNA()
• DiNUCindex_RNA()
• DisorderB()
• DisorderC()
• DisorderS()
• ENUComposition_RNA()
• ExpectedValKmerNUC_RNA()
• G_Ccontent_RNA()
• KNNPeptide()
• KNNProtein()
• kNUComposition_RNA()
• LocalPoSpKNUCF_RNA()
• maxORF_RNA()
• maxORFlength_RNA()
• NCP_DNA()
• NCP_RNA()
• NUC2Binary_RNA()
• NUCKpartComposition_RNA()
• PCPseDNC()
• PSEkNUCdi_RNA()
• PSSM()
• PSTNPds()
• PSTNPss_DNA()
• PSTNPss_RNA()
• SSEB()
• SSEC()
• SSES()
• TorsionAngle()

Substituted functions:

• ANF_DNA() with function novel_PseKNC()

Improving the execution time of most functions

ftrCOOL 0.1.0

Initial Release

ftrCOOL documentation built on Nov. 30, 2021, 1:07 a.m.