ftrCOOL
Feature Extraction from Biological Sequences

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Feature Extraction from Biological Sequences

MD5
NEWS.md
NAMESPACE
DESCRIPTION
R/EGAAComposition.R R/readTorsionDir.R R/binary_3bit_T2.R R/PseKRAAC_T7.R R/alphabetCheck.R R/CkSGAApair.R R/binary_5bit_T1.R R/CTDC.R R/GrpDDE.R R/Mismatch_DNA.R R/maxORF.R R/EffectiveNumberOfCodon.R R/PseKRAAC_T4.R R/ExpectedValueAA.R R/OPF_10bit.R R/CkSNUCpair_RNA.R R/CodonUsage_RNA.R R/Zcurve9bit_DNA.R R/AAutoCor.R R/KNNProtein.R R/DisorderB.R R/Mismatch_RNA.R R/EIIP.R R/DiNUCindex_DNA.R R/KNN_RNA.R R/PS3_DNA.R R/AESNN3.R R/AAindex.R R/conjointTriad.R R/CTDD.R R/APAAC.R R/TriNUCindex_DNA.R R/TorsionAngle.R R/binary_3bit_T5.R R/PCPseDNC.R R/CTD.R R/PseKRAAC_T10.R R/DDE.R R/PS2_DNA.R R/ASDC.R R/ExpectedValueGAA.R R/APkNUCTri_DNA.R R/PseKRAAC_T1.R R/kAAComposition.R R/PS3_RNA.R R/NUC2Binary_RNA.R R/ASDC_RNA.R R/Zcurve144bit_DNA.R R/DiNUCindex_RNA.R R/Zcurve9bit_RNA.R R/Zcurve36bit_RNA.R R/SSEB.R R/PSSM.R R/TPCP_DNA.R R/PseKRAAC_T3A.R R/PseKRAAC_T5.R R/AutoCorTriNUC_DNA.R R/PSTNPss_DNA.R R/Zcurve48bit_RNA.R R/DPCP_RNA.R R/maxORFlength_DNA.R R/KNN_DNA.R R/zSCALE.R R/LocalPoSpKNUCF_DNA.R R/fickettScore.R R/APkNUCdi_DNA.R R/Zcurve48bit_DNA.R R/PseKRAAC_T8.R R/DiNUC2Binary_RNA.R R/SOCNumber.R R/PSEkNUCdi_RNA.R R/DPCP_DNA.R R/QSOrder.R R/NUCKpartComposition_RNA.R R/G_Ccontent_DNA.R R/KNNPeptide.R R/PseKRAAC_T6A.R R/ExpectedValueKmerAA.R R/ExpectedValKmerNUC_RNA.R R/ASDC_DNA.R R/kNUComposition_DNA.R R/PseKRAAC_T3B.R R/GAAKpartComposition.R R/conjointTrKS.R R/CodonFraction.R R/binary_3bit_T4.R R/maxORF_RNA.R R/ASA.R R/NUCKpartComposition_DNA.R R/binary_3bit_T7.R R/LocalPoSpKNUCF_RNA.R R/ANF_RNA.R R/Zcurve12bit_RNA.R R/AA2Binary.R R/AAKpartComposition.R R/Zcurve36bit_DNA.R R/G_Ccontent_RNA.R R/MMI_RNA.R R/NCP_DNA.R R/SSEC.R R/Blosum62.R R/ENUComposition_DNA.R R/CkSAApair.R R/OPF_7bit_T1.R R/ANF_DNA.R R/PseKRAAC_T6B.R R/PSTNPss_RNA.R R/PSTNPds.R R/binary_5bit_T2.R R/kNUComposition_RNA.R R/APkNUCdi_RNA.R R/ExpectedValueGKmerAA.R R/revComp.R R/binary_6bit.R R/fa.read.R R/PseKRAAC_T13.R R/readPSSMdir.R R/CTDT.R R/PseKRAAC_T2.R R/kGAAComposition.R R/PseKRAAC_T14.R R/binary_3bit_T1.R R/NCP_RNA.R R/OPF_7bit_T2.R R/Zcurve12bit_DNA.R R/PseEIIP.R R/DiNUC2Binary_DNA.R R/SAAC.R R/codonAdaptionIndex.R R/CkSNUCpair_DNA.R R/PS4_RNA.R R/AutoCorDiNUC_DNA.R R/Zcurve144bit_RNA.R R/DisorderS.R R/LocalPoSpKAAF.R R/PseKRAAC_T16.R R/nonStandardSeq.R R/binary_3bit_T3.R R/maxORFlength_RNA.R R/PSEkNUCTri_DNA.R R/readASAdir.R R/PSEAAC.R R/PseKRAAC_T11.R R/readss2Dir.R R/OPF_7bit_T3.R R/PS4_DNA.R R/DistancePair.R R/NUC2Binary_DNA.R R/needleman.R R/PseKRAAC_T15.R R/ExpectedValKmerNUC_DNA.R R/PSEkNUCdi_DNA.R R/MMI_DNA.R R/PS2_RNA.R R/AutoCorDiNUC_RNA.R R/PseKRAAC_T9.R R/ENUComposition_RNA.R R/nameKmer.R R/PseKRAAC_T12.R R/binary_3bit_T6.R R/SSES.R R/readDisDir.R R/SGAAC.R R/EAAComposition.R R/DisorderC.R R/CodonUsage_DNA.R
inst/extdata/negSeqPTM101.csv
inst/extdata/proteins.fasta
inst/extdata/neg2RNA.txt
inst/extdata/pos2RNA51.txt
inst/extdata/neg2RNA51.txt
inst/extdata/DNA_testing.txt
inst/extdata/LNC50Nuc.csv
inst/extdata/aaIndexcleaned_555.csv
inst/extdata/TRI_DNA.csv
inst/extdata/DI_RNA.csv
inst/extdata/pos2RNA.txt
inst/extdata/testSeq2RNA51.txt
inst/extdata/testSeq2RNA.txt
inst/extdata/poSeqPTM101.csv
inst/extdata/posData51.txt
inst/extdata/negDNA.txt
inst/extdata/standardizedAAindex_555.csv
inst/extdata/Athaliana1.fa
inst/extdata/testData51.txt
inst/extdata/posDNA.txt
inst/extdata/ptmVect101AA.csv
inst/extdata/zScale.csv
inst/extdata/Carica_papaya101RNA.txt
inst/extdata/negData.txt
inst/extdata/Grantham.txt
inst/extdata/DI_DNA.csv
inst/extdata/ncp.csv
inst/extdata/protein.fasta
inst/extdata/BLOSUM62.csv
inst/extdata/Athaliana_LNCRNA.fa
inst/extdata/testData.txt
inst/extdata/AESNN3.csv
inst/extdata/Schneider-Wrede.txt
inst/extdata/posData.txt
inst/extdata/negData51.txt
inst/testForder/test_PSSM/P31946.pssm
inst/testForder/test_PSSM/P31946_2.pssm
inst/testForder/Disdir/P62258.dis
inst/testForder/Disdir/Q04917.dis
inst/testForder/Disdir/P61981.dis
inst/testForder/Disdir/P31946.dis
inst/testForder/Disdir/P31947.dis
inst/testForder/test_Dis/P31946_2.dis
inst/testForder/test_Dis/P31946.dis
inst/testForder/test_ss2/P31946.ss2
inst/testForder/test_ss2/P31946_2.ss2
inst/testForder/PSSMdir/P62258.pssm
inst/testForder/PSSMdir/P31946.pssm
inst/testForder/PSSMdir/P61981.pssm
inst/testForder/PSSMdir/Q04917.pssm
inst/testForder/PSSMdir/P31947.pssm
inst/testForder/ss2Dir/P31946.ss2
inst/testForder/ss2Dir/P62258.ss2
inst/testForder/ss2Dir/Q04917.ss2
inst/testForder/ss2Dir/P61981.ss2
inst/testForder/ss2Dir/P31947.ss2
inst/testForder/ASAdir/P31947.spXout
inst/testForder/ASAdir/P62258.spXout
inst/testForder/ASAdir/P61981.spXout
inst/testForder/ASAdir/Q04917.spXout
inst/testForder/ASAdir/P31946.spXout
inst/testForder/test_ASA/P31946_2.spXout
inst/testForder/test_ASA/P31946.spXout
inst/testForder/test_Torsion/P31946_2.spXout
inst/testForder/test_Torsion/P31946.spXout
inst/testForder/TorsioNdir/P31947.spXout
inst/testForder/TorsioNdir/P62258.spXout
inst/testForder/TorsioNdir/P61981.spXout
inst/testForder/TorsioNdir/Q04917.spXout
inst/testForder/TorsioNdir/P31946.spXout
tests/testthat.R tests/testthat/test_EIIP.R tests/testthat/test_ExpectedValueGKmerAA.R tests/testthat/test_ficketScore.R tests/testthat/test_ExpectedValueAA.R tests/testthat/test_conjoint.R tests/testthat/test_PseKRAAC.R tests/testthat/test_PSSM.R tests/testthat/test_APAAC.R tests/testthat/test_Disorder.R tests/testthat/test_nuckpartComposition.R tests/testthat/test_Kpart.R tests/testthat/test_cksGAApair.R tests/testthat/test_blosum62.R tests/testthat/test_QSOrder.R tests/testthat/test_Nuc2Bin.R tests/testthat/test_codonAdaptionIndex.R tests/testthat/test_aautoCor.R tests/testthat/test_MMI.R tests/testthat/test_ExpectedValueGAA.R tests/testthat/test_ASA.R tests/testthat/test_PSTNPss.R tests/testthat/test_CTDC.R tests/testthat/test_GAAkpart.R tests/testthat/test_maxORFlen.R tests/testthat/test_PCPseDNC.R tests/testthat/test_OPF.R tests/testthat/test_ctd.R tests/testthat/test_TriNucIndex.R tests/testthat/test_maxORF.R tests/testthat/test_kAAcomposition.R tests/testthat/Test_Torsion.R tests/testthat/test_DistancePaire.R tests/testthat/test_nameKmer.R tests/testthat/test_alphaCheck.R tests/testthat/test_binarybit.R tests/testthat/test_PseKNCdi.R tests/testthat/test_revComp.R tests/testthat/test_GCcontent.R tests/testthat/test_APkNCTri.R tests/testthat/test_SGAAC.R tests/testthat/test_DDE.R tests/testthat/test_codonFraction.R tests/testthat/test_ExpectedValKmerAA.R tests/testthat/test_kGAAcomposition.R tests/testthat/test_AESNN3.R tests/testthat/test_APkNCdi.R tests/testthat/test_SOCNumber.R tests/testthat/test_localPosAAFreq.R tests/testthat/test_NCP.R tests/testthat/test_ExpectedValKmerNUC.R tests/testthat/test_codonUsage.R tests/testthat/test_ANF.R tests/testthat/test_SSE.R tests/testthat/test_AutoCorTri.R tests/testthat/test_EAAComposition.R tests/testthat/test_KNNpeptide.R tests/testthat/test_PSTNPds.R tests/testthat/test_GrpDDE.R tests/testthat/test_KNNnucleotide.R tests/testthat/test_SAAC.R tests/testthat/test_Dinuc2Binary.R tests/testthat/test_aaindex.R tests/testthat/test_PseEIIP.R tests/testthat/test_KNNprotein.R tests/testthat/test_PSEAAC.R tests/testthat/test_CkNUCpair.R tests/testthat/test_PS.R tests/testthat/test_zScale.R tests/testthat/test_aa2bin.R tests/testthat/test-kNUComposition.R tests/testthat/test_localPosNUCFreq.R tests/testthat/test_DiNucIndex.R tests/testthat/test_PsekNCTri.R tests/testthat/test_CTDT.R tests/testthat/test_cksAApair.R tests/testthat/test_EGAAcompos.R tests/testthat/test_Mismatch.R tests/testthat/test_needleman.R tests/testthat/test_ENUCompos.R tests/testthat/test_EffectiveNumber.R tests/testthat/test_CTDD.R tests/testthat/test_AutoCorDi.R tests/testthat/test_zcurves.R tests/testthat/test_ASDC.R tests/testthat/test_conjointKS.R tests/testthat/test_nonStandardSeq.R man/DisorderB.Rd man/DDE.Rd man/Zcurve48bit_RNA.Rd man/DiNUCindex_RNA.Rd man/LocalPoSpKNUCF_DNA.Rd man/PS2_DNA.Rd man/Zcurve12bit_RNA.Rd man/DistancePair.Rd man/PSEAAC.Rd man/KNN_DNA.Rd man/readss2Dir.Rd man/G_Ccontent_RNA.Rd man/readDisDir.Rd man/PseEIIP.Rd man/PS3_DNA.Rd man/ExpectedValueAA.Rd man/readTorsionDir.Rd man/OPF_7bit_T2.Rd man/revComp.Rd man/SAAC.Rd man/ENUComposition_DNA.Rd man/CodonUsage_RNA.Rd man/binary_5bit_T1.Rd man/QSOrder.Rd man/PSTNPss_RNA.Rd man/DiNUCindex_DNA.Rd man/PS4_RNA.Rd man/NCP_RNA.Rd man/maxORFlength_DNA.Rd man/TriNUCindex_DNA.Rd man/conjointTriad.Rd man/fa.read.Rd man/Zcurve144bit_DNA.Rd man/Zcurve144bit_RNA.Rd man/CTDT.Rd man/ASDC_DNA.Rd man/CTD.Rd man/SSEB.Rd man/ENUComposition_RNA.Rd man/readASAdir.Rd man/TPCP_DNA.Rd man/PseKRAAC_T11.Rd man/zSCALE.Rd man/EAAComposition.Rd man/PseKRAAC_T13.Rd man/PseKRAAC_T5.Rd man/kNUComposition_RNA.Rd man/ExpectedValueGAA.Rd man/kGAAComposition.Rd man/codonAdaptionIndex.Rd man/DiNUC2Binary_DNA.Rd man/CodonUsage_DNA.Rd man/OPF_7bit_T1.Rd man/EGAAComposition.Rd man/DiNUC2Binary_RNA.Rd man/DPCP_DNA.Rd man/binary_3bit_T5.Rd man/SGAAC.Rd man/binary_3bit_T3.Rd man/AAutoCor.Rd man/PseKRAAC_T9.Rd man/BLOSUM62.Rd man/binary_3bit_T2.Rd man/GrpDDE.Rd man/CkSNUCpair_RNA.Rd man/SOCNumber.Rd man/PS4_DNA.Rd man/ASDC.Rd man/KNNProtein.Rd man/PSTNPss_DNA.Rd man/conjointTriadKS.Rd man/ExpectedValKmerNUC_DNA.Rd man/AESNN3.Rd man/KNNPeptide.Rd man/PseKRAAC_T1.Rd man/binary_3bit_T7.Rd man/readPSSMdir.Rd man/LocalPoSpKNUCF_RNA.Rd man/PseKRAAC_T7.Rd man/NCP_DNA.Rd man/AAindex.Rd man/APkNUCdi_RNA.Rd man/ExpectedValueKmerAA.Rd man/DPCP_RNA.Rd man/DisorderC.Rd man/needleman.Rd man/NUC2Binary_RNA.Rd man/NUCKpartComposition_DNA.Rd man/PseKRAAC_T3B.Rd man/ANF_RNA.Rd man/Zcurve48bit_DNA.Rd man/APkNUCdi_DNA.Rd man/binary_3bit_T6.Rd man/Zcurve36bit_RNA.Rd man/SSEC.Rd man/PSSM.Rd man/alphabetCheck.Rd man/kNUComposition_DNA.Rd man/NUC2Binary_DNA.Rd man/PS3_RNA.Rd man/PseKRAAC_T8.Rd man/DisorderS.Rd man/SSES.Rd man/Zcurve36bit_DNA.Rd man/ASA.Rd man/nameKmer.Rd man/PSEkNUCdi_RNA.Rd man/AAKpartComposition.Rd man/Mismatch_DNA.Rd man/Zcurve12bit_DNA.Rd man/CTDD.Rd man/ExpectedValueGKmerAA.Rd man/maxORFlength_RNA.Rd man/PseKRAAC_T2.Rd man/PseKRAAC_T3A.Rd man/KNN_RNA.Rd man/PSEkNUCTri_DNA.Rd man/PseKRAAC_T14.Rd man/CodonFraction.Rd man/PseKRAAC_T12.Rd man/PseKRAAC_T10.Rd man/ASDC_RNA.Rd man/CkSNUCpair_DNA.Rd man/PSTNPds.Rd man/PseKRAAC_T4.Rd man/AutoCorDiNUC_DNA.Rd man/LocalPoSpKAAF.Rd man/TorsionAngle.Rd man/GAAKpartComposition.Rd man/EIIP.Rd man/G_Ccontent_DNA.Rd man/APkNUCTri_DNA.Rd man/binary_3bit_T1.Rd man/APAAC.Rd man/PS2_RNA.Rd man/AA2Binary.Rd man/ExpectedValKmerNUC_RNA.Rd man/OPF_7bit_T3.Rd man/AutoCorDiNUC_RNA.Rd man/PSEkNUCdi_DNA.Rd man/PCPseDNC.Rd man/ANF_DNA.Rd man/Zcurve9bit_RNA.Rd man/OPF_10bit.Rd man/binary_6bit.Rd man/CTDC.Rd man/Zcurve9bit_DNA.Rd man/CkSAApair.Rd man/MMI_RNA.Rd man/MMI_DNA.Rd man/PseKRAAC_T15.Rd man/binary_3bit_T4.Rd man/maxORF_RNA.Rd man/AutoCorTriNUC_DNA.Rd man/PseKRAAC_T6B.Rd man/binary_5bit_T2.Rd man/kAAComposition.Rd man/PseKRAAC_T16.Rd man/CkSGAApair.Rd man/maxORF.Rd man/EffectiveNumberCodon.Rd man/nonStandardSeq.Rd man/Mismatch_RNA.Rd man/PseKRAAC_T6A.Rd man/fickettScore.Rd man/NUCKpartComposition_RNA.Rd
ftrCOOL documentation built on Nov. 30, 2021, 1:07 a.m.

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