readss2Dir: Read ss2 predicted Directory (readss2Dir)
In ftrCOOL: Feature Extraction from Biological Sequences
Description
Usage
Arguments
Value
Examples
Description
This function reads a directory that contains the output files of PSIPRED
It gets the directory path as the input and returns a list of vectors. Each vector contains the secondary structure of the amino acids in a peptide/protein sequence.
Usage
1
readss2Dir(dirPath)
Arguments
dirPath
The path of the directory which contains all predss2 files. Each file belongs to a sequence.
Value
returns a list of vectors with all the predicted secondary structure for each amino acid. The length of the
list is the number of files(sequences) and the length of each vector is (length sequence(i))
Examples
1
2
3
PredSS2dir<-system.file("testForder",package="ftrCOOL")
PredSS2dir<-paste0(PredSS2dir,"/ss2Dir/")
listPredVect<-readss2Dir(PredSS2dir)
ftrCOOL documentation built on Nov. 30, 2021, 1:07 a.m.
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Description Usage Arguments Value Examples
Description
This function reads a directory that contains the output files of PSIPRED It gets the directory path as the input and returns a list of vectors. Each vector contains the secondary structure of the amino acids in a peptide/protein sequence.
Usage
1 | readss2Dir(dirPath)
|
Arguments
dirPath |
The path of the directory which contains all predss2 files. Each file belongs to a sequence. |
Value
returns a list of vectors with all the predicted secondary structure for each amino acid. The length of the list is the number of files(sequences) and the length of each vector is (length sequence(i))
Examples
1 2 3 | PredSS2dir<-system.file("testForder",package="ftrCOOL")
PredSS2dir<-paste0(PredSS2dir,"/ss2Dir/")
listPredVect<-readss2Dir(PredSS2dir)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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