Description Usage Arguments Value Examples
This function reads a directory that contains the output psi-blast. It gets the directory path as the input and returns a list of vectors. Each vector includes the type for the amino acids of the sequence.
1 | readPSSMdir(dirPath)
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dirPath |
the path of a directory which contains all the VSL2 output files. |
a list of vectors with all the predicted disorder/order type for each amino acid. The length of the list is equal to the number of files(sequences) and the length of each vector is the length of the sequence(i).
1 2 3 | pssmDir<-system.file("testForder",package="ftrCOOL")
pssmDir<-paste0(pssmDir,"/PSSMdir/")
listPredVect<-readPSSMdir(pssmDir)
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