write.bed.matrix | R Documentation |
bed.matrix
Save a bed.matrix
in several files
write.bed.matrix(x, basename, bed = paste(basename, ".bed", sep=""),
fam = paste(basename, ".fam", sep=""),
bim = paste(basename, ".bim", sep=""),
rds = paste(basename, ".rds", sep=""))
x |
A |
basename |
Basename of all files |
bed |
Name of the |
fam |
Name of the |
bim |
Name of the |
rds |
Name of the |
If any of bed
, fam
, bim
and rds
is NULL
,
the corresponding file will not be written.
The .fam
and .bim
files are useful for reading files with other softwares.
The .rds
file can be read by read.bed.matrix
.
The .bed
, .fam
and .bim
files follow the PLINK specifications
(http://zzz.bwh.harvard.edu/plink/binary.shtml).
Hervé Perdry and Claire Dandine-Roulland
read.bed.matrix
, saveRDS
# Load data
data(LCT)
x <- as.bed.matrix(LCT.gen, LCT.fam, LCT.bim)
# Write object in LCT.bed and LCT.RData
## Not run:
write.bed.matrix(x, "LCT")
## End(Not run)
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