Files in gaston
Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models

NEWS
DESCRIPTION
TODO
MD5
NAMESPACE
vignettes/gaston.Rnw
src/m4_bind_inds.cpp
src/ai-reml-logit-nk-covar.h
src/snp_hash.h
src/gwas_logitmm_wald.cpp
src/m4_ldthin_right.cpp
src/m4_ld.h
src/gwas_lmm_diago_wald.cpp
src/diago2_full.h
src/isnullptr.cpp
src/m4_exports.cpp
src/hwe.cpp
src/allele_recoding.cpp
src/ai-reml-logit-1k.h
src/m4_kinship.cpp
src/ai-reml-nk-covar.h
src/logp_thinning.cpp
src/snp_duplicated.cpp
src/m4_bind_snps.cpp
src/m4_read_vcf_2.cpp
src/pre_likelihood.cpp
src/m4_conversion.cpp
src/m4_prod_ms.cpp
src/m4_stats.cpp
src/m4_transpose.cpp
src/lmm_diago_min_max_h2.cpp
src/ai-reml-logit-nk.h
src/export-aireml-1k.cpp
src/lmm_diago_min_max_h2.h
src/diago2_full_nocovar.h
src/matrix-varia.cpp
src/Makevars
src/m4_ldthin_random.cpp
src/matrix4.h
src/export-aireml-nk.cpp
src/PoorMansParallel.h
src/gwas_lmm_diago_lrt.cpp
src/m4_ldp.cpp
src/m4_kinship_type.h
src/lmm_diago_fit.cpp
src/ai-reml-logit-1k-covar.h
src/ai-reml-nk.h
src/davies.c
src/gwas_lmm_score.cpp
src/export-aireml-logit-nk.cpp
src/matrix4.cpp
src/m4_prod2_ms.cpp
src/optimize_2.h
src/gzstream.cpp
src/export-aireml-logit-1k.cpp
src/flip_strand.h
src/lmm_diago_full_likelihood.cpp
src/m4_ld.cpp
src/m4_extractsnp.cpp
src/re_likelihood.cpp
src/m4_recode.cpp
src/m4_extractind.cpp
src/loubar.cpp
src/loubar.h
src/logit.h
src/Parallel.h
src/m4_ldthin_left.cpp
src/gzstream.h
src/ai-reml-1k-covar.h
src/diago2.h
src/ai-reml-logit-1k-covar.cpp
src/m4_dims.cpp
src/matrix-varia.h
src/m4_prod2_p.cpp
src/gaston_init.c
src/manhattan_thinning.cpp
src/ai-reml-1k.h
src/gwas_logit_wald.cpp
src/snp_match.cpp
src/any.h
src/random_ortho.cpp
src/m4_bed.cpp
src/diago2_nocovar.h
src/m4_prod_p.cpp
src/export-logit.cpp
src/m4_kinship_p.cpp
src/PoorMansParallel.cpp
src/hwe_chi.cpp
src/lmm_diago_likelihood.cpp
src/gwas_lm_quanti.cpp
R/bm_select.r R/bm_ld_thinner.r R/all_eq.r R/bm_files.r R/lmm.restricted.likelihood.r R/zzz.r R/bm_merge.r R/getNumThreads.r R/gwas.r R/rbind.r R/bm_ld.r R/logp.thinning.r R/bm.r R/qqplot.pvalues.r R/manhattan.thinning.r R/bm_vcf.r R/lik_contour.r R/lmm_diago_full.r R/lmm_diago.r R/ld_plot.r R/logistic_mm_aireml.r R/bm_as_bm.r R/bm_stats.r R/snp_match.r R/bm_hwe.r R/score.r R/bm_interface.r R/setThreadOptions.r R/lmm_simu.r R/manhattan.r R/bm_product.r R/random_pm.r R/bm_genomic_sex.r R/bm_subsetting.r R/snp_duplicated.r R/lmm_aireml.r R/cbind.r R/lmm.profile.restricted.likelihood.r R/bm_grm.r
data/datalist
data/TTN.rda
data/AGT.rda
data/LCT.rda
build/vignette.rds
inst/include/diago2.h
inst/include/ai-reml-logit-nk.h
inst/include/ai-reml-logit-nk-covar.h
inst/include/ai-reml-nk-covar.h
inst/include/lmm_diago_min_max_h2.h
inst/include/ai-reml-logit-1k.h
inst/include/diago2_full.h
inst/include/m4_kinship_type.h
inst/include/matrix-varia.h
inst/include/snp_hash.h
inst/include/ai-reml-nk.h
inst/include/gaston.h
inst/include/optimize_2.h
inst/include/ai-reml-logit-1k-covar.h
inst/include/diago2_nocovar.h
inst/include/ai-reml-1k-covar.h
inst/include/diago2_full_nocovar.h
inst/include/logit.h
inst/include/any.h
inst/include/ai-reml-1k.h
inst/include/matrix4.h
inst/include/gaston/optimize_2.h
inst/include/gaston/matrix-varia.h
inst/include/gaston/logit.h
inst/include/gaston/ai-reml-nk.h
inst/include/gaston/ai-reml-logit-nk-covar.h
inst/include/gaston/m4_kinship_type.h
inst/include/gaston/lmm_diago_min_max_h2.h
inst/include/gaston/ai-reml-1k-covar.h
inst/include/gaston/ai-reml-1k.h
inst/include/gaston/diago2_full_nocovar.h
inst/include/gaston/any.h
inst/include/gaston/matrix4.h
inst/include/gaston/ai-reml-logit-1k-covar.h
inst/include/gaston/diago2_nocovar.h
inst/include/gaston/ai-reml-logit-1k.h
inst/include/gaston/diago2.h
inst/include/gaston/ai-reml-nk-covar.h
inst/include/gaston/diago2_full.h
inst/include/gaston/snp_hash.h
inst/include/gaston/ai-reml-logit-nk.h
inst/extdata/LCT.bim
inst/extdata/LCT.vcf.gz
inst/extdata/chr2.rds
inst/extdata/LCT.rds
inst/extdata/chr2.bed
inst/extdata/LCT.bed
inst/extdata/LCT.fam
inst/extdata/LCT.vcf.gz.tbi
inst/doc/gaston.R
inst/doc/gaston.Rnw
inst/doc/gaston.pdf man/bed.matrix-class.Rd man/LD.plot.Rd man/score.fixed.Rd man/setThreadOptions.Rd man/bed.loadings.Rd man/LCT.Rd man/lmm.aireml.Rd man/set.hwe.Rd man/SNP.duplicated.Rd man/association.test.Rd man/Tests.Rd man/read.vcf.Rd man/read.bed.matrix.Rd man/qqplot.pvalues.Rd man/set.stats.Rd man/gaston-package.Rd man/TTN.Rd man/LD.thin.Rd man/LD.Rd man/lmm.restricted.likelihood.Rd man/lmm.diago.likelihood.Rd man/lmm.diago.Rd man/score.variance.Rd man/lmm.simu.Rd man/AGT.Rd man/is.autosome.Rd man/random.pm.Rd man/select.inds.Rd man/select.snps.Rd man/manhattan.Rd man/DM.Rd man/logistic.mm.aireml.Rd man/GRM.Rd man/lik.contour.Rd man/write.bed.matrix.Rd man/as.bed.matrix.Rd man/SNP.match.Rd man/reshape.GRM.Rd man/set.genomic.sex.Rd
gaston documentation built on Jan. 31, 2018, 1:05 a.m.