Files in gen3sis
General Engine for Eco-Evolutionary Simulations

MD5

NAMESPACE

DESCRIPTION

R/RcppExports.R R/summary_statistics.R R/gen3sis_landscape.R R/plotting_functions.R R/dispersal.R R/speciation.R R/simulation.R R/divergence.R R/internal_functions.R R/skeleton_config.R R/skeleton_landscape_metadata.R R/state_handling.R R/ecology.R R/observations.R R/gen3sis_main.R R/input_creation.R R/zzz.R R/evolution.R R/config_handling.R R/gen3sis_species.R

src/RcppExports.cpp

src/RcppFunctions.cpp

src/distances.cpp

inst/CITATION

inst/doc/create_input_landscape.html

inst/doc/create_config.R inst/doc/create_input_landscape.R inst/doc/design_landscape.Rmd inst/doc/create_input_landscape.Rmd inst/doc/design_landscape.R

inst/doc/create_config.html

inst/doc/create_config.Rmd

inst/doc/introduction.html

inst/doc/design_landscape.html

inst/extdata/SouthAmerica/landscape/landscapes.rds

inst/extdata/SouthAmerica/landscape/METADATA.txt

inst/extdata/SouthAmerica/images/var_cost.png

inst/extdata/SouthAmerica/images/introduction_richness.png

inst/extdata/SouthAmerica/images/const_cost.png

inst/extdata/SouthAmerica/output/config_southamerica/sgen3sis.rds

inst/extdata/SouthAmerica/config/config_southamerica_observer.R inst/extdata/SouthAmerica/config/config_southamerica.R inst/extdata/EmptyConfig/config_empty.R

inst/extdata/WorldCenter/landscape/landscapes.rds

inst/extdata/WorldCenter/landscape/METADATA.txt

inst/extdata/WorldCenter/landscape/distances_local/distances_local_15.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_50.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_22.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_34.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_4.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_14.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_17.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_24.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_44.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_23.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_0.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_40.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_33.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_42.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_19.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_38.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_32.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_26.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_31.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_16.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_43.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_13.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_30.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_28.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_6.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_49.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_27.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_10.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_3.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_1.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_12.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_48.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_35.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_7.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_45.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_25.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_37.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_29.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_21.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_5.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_39.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_18.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_20.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_9.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_11.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_2.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_36.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_47.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_46.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_41.rds

inst/extdata/WorldCenter/landscape/distances_local/distances_local_8.rds

inst/extdata/WorldCenter/output/config_worldcenter/starting_richness.pdf inst/extdata/WorldCenter/output/config_worldcenter/starting_ranges.pdf

inst/extdata/WorldCenter/output/config_worldcenter/runtime_information.txt

inst/extdata/WorldCenter/output/config_worldcenter/sgen3sis.rds

inst/extdata/WorldCenter/output/config_worldcenter/phy.nex

inst/extdata/WorldCenter/output/config_worldcenter/phy.txt

inst/extdata/WorldCenter/output/config_worldcenter/landscapes/landscape_t_25.rds

inst/extdata/WorldCenter/output/config_worldcenter/landscapes/landscape_t_50.rds

inst/extdata/WorldCenter/output/config_worldcenter/landscapes/landscape_t_0.rds

inst/extdata/WorldCenter/output/config_worldcenter/species/species_t_50.rds

inst/extdata/WorldCenter/output/config_worldcenter/species/species_t_0.rds

inst/extdata/WorldCenter/output/config_worldcenter/species/species_t_25.rds

inst/extdata/WorldCenter/config/config_worldcenter.R

inst/extdata/WorldCenter/input_rasters/area_rasters.grd

inst/extdata/WorldCenter/input_rasters/arid_rasters.gri

inst/extdata/WorldCenter/input_rasters/temp_rasters.gri

inst/extdata/WorldCenter/input_rasters/arid_rasters.grd

inst/extdata/WorldCenter/input_rasters/area_rasters.gri

inst/extdata/WorldCenter/input_rasters/temp_rasters.grd

inst/extdata/CaseStudy1/reference_saves/phy.nex

inst/extdata/CaseStudy1/reference_saves/phy.txt

inst/extdata/CaseStudy1/reference_saves/sgen3sis_summary.rds

inst/extdata/CaseStudy1/landscape/landscapes.rds

inst/extdata/CaseStudy1/landscape/METADATA.txt

inst/extdata/CaseStudy1/landscape/case_study_landscape.gif

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_116.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_56.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_102.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_47.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_34.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_137.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_29.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_41.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_134.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_86.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_87.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_118.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_40.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_17.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_12.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_58.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_44.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_37.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_80.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_46.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_110.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_79.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_78.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_60.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_59.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_75.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_124.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_70.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_73.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_38.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_3.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_22.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_105.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_129.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_67.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_19.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_119.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_61.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_32.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_72.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_128.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_77.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_30.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_35.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_6.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_97.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_130.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_112.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_55.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_48.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_74.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_76.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_136.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_51.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_132.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_62.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_123.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_50.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_125.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_2.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_106.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_89.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_45.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_4.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_31.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_14.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_107.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_99.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_18.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_91.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_109.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_104.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_113.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_101.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_7.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_88.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_120.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_49.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_92.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_1.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_20.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_90.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_11.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_15.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_115.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_64.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_0.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_94.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_114.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_8.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_42.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_133.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_66.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_21.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_23.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_5.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_63.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_108.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_33.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_122.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_53.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_71.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_57.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_81.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_27.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_95.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_10.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_52.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_111.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_135.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_68.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_82.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_138.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_139.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_100.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_26.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_36.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_69.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_131.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_103.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_83.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_126.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_39.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_127.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_93.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_98.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_121.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_54.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_25.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_16.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_84.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_65.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_85.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_13.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_24.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_9.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_28.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_117.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_96.rds

inst/extdata/CaseStudy1/landscape/distances_full/distances_full_43.rds

inst/extdata/CaseStudy1/config/config_fast.R inst/extdata/CaseStudy1/config/config_rte.R

inst/logo/richness_plot.png

inst/logo/gen3sis_logo.png

build/vignette.rds

tests/testthat.R tests/testthat/test-gen3sis_main.R tests/testthat/test-distances.R tests/testthat/test-input_creation.R tests/testthat/test-config_handling.R vignettes/design_landscape.Rmd vignettes/create_input_landscape.Rmd vignettes/create_config.Rmd vignettes/introduction.Rmd man/get_divergence_factor.Rd man/write_config_skeleton.Rd man/plot_landscape_overview.Rd man/color_richness.Rd man/create_ancestor_species.Rd man/plot_raster_multiple.Rd man/skeleton_config.Rd man/save_abundance.Rd man/plot_raster_single.Rd man/plot_species_abundance.Rd man/create_input_config.Rd man/plot_summary.Rd man/save_landscape.Rd man/verify_config.Rd man/color_richness_non_CVDCBP.Rd man/apply_ecology.Rd man/evolution_mode_none.Rd man/get_dispersal_values.Rd man/plot_species_presence.Rd man/prepare_directories.Rd man/save_richness.Rd man/get_divergence_matrix.Rd man/save_species.Rd man/run_simulation.Rd man/get_geo_richness.Rd man/create_input_landscape.Rd man/plot_landscape.Rd man/save_traits.Rd man/save_occupancy.Rd man/create_species.Rd man/save_phylogeny.Rd man/apply_evolution.Rd man/plot_richness.Rd man/save_divergence.Rd man/gen3sis.Rd man/plot_ranges.Rd

gen3sis documentation built on Nov. 22, 2023, 5:07 p.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

gen3sis
General Engine for Eco-Evolutionary Simulations

Files in gen3sis
General Engine for Eco-Evolutionary Simulations

R Package Documentation

Browse R Packages

We want your feedback!

gen3sis General Engine for Eco-Evolutionary Simulations

Files in gen3sis General Engine for Eco-Evolutionary Simulations

R Package Documentation

Browse R Packages

We want your feedback!

gen3sis
General Engine for Eco-Evolutionary Simulations

Files in gen3sis
General Engine for Eco-Evolutionary Simulations