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inst/doc/opt74.md
In genepop: Population Genetic Data Analysis Using Genepop
Sub-option 4 converts the Genepop input file into the format required by Linkdos\index{Linkdos program}, a program described by @GarnierD92 and based on @BlackK85. This program performs pairwise linkage disequilibria analyses in subdivided populations and @Ohta82p’s (1982) $D$ statistics.\index{Linkage disequilibrium!Ohta's statistics} The new format is saved in the file yourdata.LKD. The source Linkdos program (LINKDOS.PAS) and an executable (LINKDOS.EXE) have been distributed with previous versions of Genepop with permission of their authors, and are still available on the Genepop distribution page. The executable distributed with Genepop has been compiled for 40 samples, 20 loci and 99 alleles per locus. It may be wise to relabel alleles (option 8.3) before the conversion. @GarnierD92 should be cited whenever this program is used.
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genepop documentation built on Jan. 22, 2023, 1:07 a.m.
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Sub-option 4 converts the Genepop input file into the format required by Linkdos\index{Linkdos program}, a program described by @GarnierD92 and based on @BlackK85. This program performs pairwise linkage disequilibria analyses in subdivided populations and @Ohta82p’s (1982) $D$ statistics.\index{Linkage disequilibrium!Ohta's statistics} The new format is saved in the file yourdata.LKD. The source Linkdos program (LINKDOS.PAS) and an executable (LINKDOS.EXE) have been distributed with previous versions of Genepop with permission of their authors, and are still available on the Genepop distribution page. The executable distributed with Genepop has been compiled for 40 samples, 20 loci and 99 alleles per locus. It may be wise to relabel alleles (option 8.3) before the conversion. @GarnierD92 should be cited whenever this program is used.
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